Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g48 ATGAGTACAAACCTATATGAAAGTTTCTATATATATATATATATATATATATATATATACTCTCAAAAATCAATCTTATTATTATTACACTTTACAGTGGAAGCTCTGGAAGAGATCGCGAAAACTCTGGGGAAGACGGACTGGAACTTCAGTGCGGATCCATGCGGCGGCGAGTGGGGTTGGGCGACGAAGAATCCGGTGAAGGGGTCGGAAAATGCTGTCACTTGTAGCTGCACCAACAACACTGTTTGCCATGTTGTTGGCATAGTCCTCAAGACTCAGAATCTCCCGGGATCTCTCCCACCAGAGCTGGTGAAGCTTCCTTACCTCCAAGAAATTGACTTCACCCGCAACTACCTCAACGGTTCAATCCCTCCAGAATGGGGTACAATGCAACTAGTAAACATTTCTCTGATGGGAAACCGGTTGACGGGTTCGATTCCCAAAGAGCTTGGAAACATCTCTACTCTTGCAAACCTAACCGTAGAGTCCAATCAGCTTTCAGGGGTTCTTCCTCAGGAGCTTGGGAATCTGCCCAGTATAGAGAGAATACTTCTTACCTCAAACAACTTCACTGGGGAGTTACCAGAAACATTTGCAGGGCTTACCACATTGAAGGACTTTCGGGTTGCAGATAATCAGTTCACAGGAAAGATACCCAATTTTATACAGAACTGGACAAAACTTGAAAAATTAGTGATTCATGGGAGTGGTTTCAGTGGGCCTATTCCTTCTGGCATTGCCCTTTTGACAAAAATAACTGACTTGAGAATCAGTGACCTGAATGGAACTGAAGCAACTTTTCCACCATTGAGTGATATGAGAAACTTGAAAACACTGATATTGAGGAGTTGCAGTATTGTTGGCCCGCTACCTGATTACCTTGGGGAAATGACAAAATTGAAAACCCTAGATCTGAGTTTTAACAAACTAACTGGAGAAATTCCAAGCAGCTTTGTCGGTCTATCAAAGGCAGATTACATATATTTTACCGGAAACATGCTAACTGGAGCCGTGCCTGATTGGATGCTGAAAAGAGGAGACAACTATGATCTTTCATACAATAACTTTACTAGTGAAAGCTCAAGAGGATGTCAAGAACGGAGTGTAAATTTGTTTGGAAGCTCATCAGGAGGAAATAACTCTGGAATTGTCTCGTGCTTGAGAAGCTTTAATTGCCCAAAAAAGTTTTACTCCATGCACATAAATTGTGGTGGAAAAGAAGTAATTGTTGATGGAAATACCACATATGAAGATGACAAAGATTCTGGTGGACCATCAAAGTTCTATCAGAGTAGAACAAACTGGGCATTCAGCAGCACAGGTCACTTCATGGACGATGACCATCCTACGGACTCCTTTATTGGGACAAACGTGTCTAGACTCGCCATGGAAAATTCTGGACTGTATACAACCGCACGCCTCTCCGCCCTGTCTCTCACTTATTATGGATTCTGTCTAGAAAATGGAAACTACACAGTAAAGCTTCACTTTGCAGAGATCACCTTTACTGATGACAAAACATATAGCAGCCTTGGAAGGCGTTTGTTTGATGTTTATGTTCAGGATGAGCTAGTTCTCAAGGATTTCAATATTGAGGATGAAGCAGGGGGTGTTAGCAAGGAAATCTTAAAATTTTTTACTGCAATTGTGACTAATAATACCTTGGAAATTCGCTTCTATTGGGCTGGGAAAGGGACTACAGGTATCCCAGTTAGAGGAGTTTACGGTCCTCTTATATCAGCTATTTCTGTGGACCCTGATTTTATACCTCCTACTGAAAATAGAAGCAGTAGCATATCTGTTGGCATTGTGGTTGGCGTTGTGGTTGGCATTGTGGCTGGAGTCATTCTTCTTGTCTTCCTGGTTATAGGTATCCTTTGGTGGAGAGTCTGCCTAAGGCGCAAAGATACGTTGGAACAAGAGTTAAAGGGTCTTGATCTGCAGACTGGTTTGTTTACCTTAAGGCAAATTAAGGCTGCCACAAACAACTTTGATGCTGCCAACAAAATTGGAGAAGGTGGATTTGGTTCTGTTTACAAGGGTGTCTTATCCGATGGCACCATAATTGCAGTGAAGCAGCTTTCTTCCAAATCAAAACAAGGAAACCGTGAGTTTGTGACTGAGATAGGCATGATTTCTGCTCTTCAACATCCTCATCTTGTGAAGCTCTATGGCTGTTGTATAGAAGGAAATCAGTTGTTGCTGATATACGAGTACATGGAAAATAACAGCCTCGCTCGTGCTTTGTTTGGCCCTGAAGAATGTCAATTACAATTGGATTGGCCAACTAGACACAGGATCTGTGTTGGCATAGCAAGAGGGTTGGCTTATCTTCATGAAGAATCAAGGCTGAAGATCGTCCACCGAGACATCAAGGCCACAAATGTGCTTCTTGATAAGGATCTTAACCCCAAAATATCTGACTTTGGTTTGGCCAAACTTGATGAAGAGTATAACACCCACATTAGCACGCGGATTGCTGGTACATTTGGATATATGGCACCTGAATATGCAATGCGGGGCTATTTAACCGACAAAGCAGATGTTTACAGTTTTGGAGTTGTTGCCTTGGAAATTGTCAGTGGAAGAAGCAACACTACTTATAGGCCAAAAGAAGAATCCATCTATCTTCTTGATCGGGTAATTTTGACAACATTCTTTCTTGCATTTGTCGTCTCTGAATTTTCTCATTCTTATCCATTTAGGCTGATTGCATAA 2721 41.9 MSTNLYESFYIYIYIYIYIYSQKSILLLLHFTVEALEEIAKTLGKTDWNFSADPCGGEWGWATKNPVKGSENAVTCSCTNNTVCHVVGIVLKTQNLPGSLPPELVKLPYLQEIDFTRNYLNGSIPPEWGTMQLVNISLMGNRLTGSIPKELGNISTLANLTVESNQLSGVLPQELGNLPSIERILLTSNNFTGELPETFAGLTTLKDFRVADNQFTGKIPNFIQNWTKLEKLVIHGSGFSGPIPSGIALLTKITDLRISDLNGTEATFPPLSDMRNLKTLILRSCSIVGPLPDYLGEMTKLKTLDLSFNKLTGEIPSSFVGLSKADYIYFTGNMLTGAVPDWMLKRGDNYDLSYNNFTSESSRGCQERSVNLFGSSSGGNNSGIVSCLRSFNCPKKFYSMHINCGGKEVIVDGNTTYEDDKDSGGPSKFYQSRTNWAFSSTGHFMDDDHPTDSFIGTNVSRLAMENSGLYTTARLSALSLTYYGFCLENGNYTVKLHFAEITFTDDKTYSSLGRRLFDVYVQDELVLKDFNIEDEAGGVSKEILKFFTAIVTNNTLEIRFYWAGKGTTGIPVRGVYGPLISAISVDPDFIPPTENRSSSISVGIVVGVVVGIVAGVILLVFLVIGILWWRVCLRRKDTLEQELKGLDLQTGLFTLRQIKAATNNFDAANKIGEGGFGSVYKGVLSDGTIIAVKQLSSKSKQGNREFVTEIGMISALQHPHLVKLYGCCIEGNQLLLIYEYMENNSLARALFGPEECQLQLDWPTRHRICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEYNTHISTRIAGTFGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGRSNTTYRPKEESIYLLDRVILTTFFLAFVVSEFSHSYPFRLIA* 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 535126 547165 - Vvi19g48 Vvi19g48 781547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g48 906 SUPERFAMILY L domain-like 74 342 - -
Vvi19g48 906 Pfam Protein tyrosine and serine/threonine kinase 668 868 IPR001245 GO:0004672|GO:0006468
Vvi19g48 906 Gene3D Phosphorylase Kinase; domain 1 630 740 - -
Vvi19g48 906 Gene3D - 397 587 - -
Vvi19g48 906 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Vvi19g48 906 Gene3D Ribonuclease Inhibitor 30 156 IPR032675 -
Vvi19g48 906 Gene3D Ribonuclease Inhibitor 157 224 IPR032675 -
Vvi19g48 906 Pfam Malectin domain 399 583 IPR021720 -
Vvi19g48 906 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 377 886 - -
Vvi19g48 906 Pfam Leucine rich repeat 275 335 IPR001611 GO:0005515
Vvi19g48 906 ProSiteProfiles Protein kinase domain profile. 665 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g48 906 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 289 342 - -
Vvi19g48 906 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 73 286 - -
Vvi19g48 906 Gene3D Transferase(Phosphotransferase) domain 1 741 894 - -
Vvi19g48 906 SUPERFAMILY Protein kinase-like (PK-like) 650 886 IPR011009 -
Vvi19g48 906 Gene3D Ribonuclease Inhibitor 225 367 IPR032675 -
Vvi19g48 906 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 377 886 - -
Vvi19g48 906 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 289 342 - -
Vvi19g48 906 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 73 286 - -
Vvi19g48 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Vvi19g48 906 CDD STKc_IRAK 671 879 - -
Vvi19g48 906 SMART serkin_6 665 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g274 Vvi19g48 ECH
Vvi10g279 Vvi19g48 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76464 PF07714 PK_Tyr_Ser-Thr 4.10E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g48 - - vvi:100253721 1661.74