Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g481 ATGATTCATGCAGCGAGCAGCAAGAGGAGGTACATAACAAAAATTGGACAGGGAAATCTTTCTACCCGGATTTTCACTTTTCGCGAGCTATGTTCTGCAACTAAGAACTTCAAACGTGAATGTTTGCTGGGAGAAGGCGGTTTTGGGAGGGTGTACAAAGGCTACATTGACAACCCAAGCCAAGCTGTTGCTGTTAAGCAACTGGACAGGAATGGATTCCAAGGAAACCGAGAATTCCTCGTGGAGGTTCTGATGTTGAGTCTCCTCCACCATCCCAATCTTGTCAATTTGGTTGGATATTGCGCGGATGGTGATCAAAGGATTTTAGTGTATGAGTACATGGCCAATGGTTCCTTGGAGGATCACCTTCTTGGTTTATCACAAAATAGGAAACCTCTGGATTGGATCACCAGGATGAGAATTGCTGAAGGAGCAGCAAGAGGACTTGAACACTTGCATGAAACAGCCAACCCTCCAGTAATTTACAGAGACTTCAAAGCATCAAACATACTGTTGGATGAGGACTTCAATCCAAAGCTCTCAGATTTTGGACTTGCCAAGGTAGGTCCAACTGGGGATAACACCCATGTCTCCACCAGGGTGATGGGGACATACGGCTATTGTGCACCAGAGTATGCCCTCACAGGCCGGTTGACTACAATGTCCGATGTATACAGCTTTGGAGTTGTGTTCTTGGAGATCATCACAGGACGGAGGGTTATCGACTATTCAAGACCAAGAAATGAGCAGAATCTAGTTACTTGGGCACAGCCACTGCTTAAAGACAGAAGAAATTTTAAGTTAATGGCAGACCCTTCGCTTGAAGGAAACTACCCAACAAAGGGTCTCTACCAAGCTATTGCAGTTGCAGCCATGTGTCTCCAAGAGGAGGCCAGTACTCGGCCTTTGATCACTGACGTTGTCATAGCTCTAGCACACTTAGCTGGAAACGACATTGAAGATGAGGGTGCAGAAGAAGACGATGTGGCATCAGATACCGTTGATGGAAACAGTGATGATAGAGGTATTGAGACCGAGGATACACCAGAGGCTCGGTAG 1059 46.27 MIHAASSKRRYITKIGQGNLSTRIFTFRELCSATKNFKRECLLGEGGFGRVYKGYIDNPSQAVAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYEYMANGSLEDHLLGLSQNRKPLDWITRMRIAEGAARGLEHLHETANPPVIYRDFKASNILLDEDFNPKLSDFGLAKVGPTGDNTHVSTRVMGTYGYCAPEYALTGRLTTMSDVYSFGVVFLEIITGRRVIDYSRPRNEQNLVTWAQPLLKDRRNFKLMADPSLEGNYPTKGLYQAIAVAAMCLQEEASTRPLITDVVIALAHLAGNDIEDEGAEEDDVASDTVDGNSDDRGIETEDTPEAR* 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6231409 6232754 - Vvi19g481 Vvi19g481 781980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g481 352 Gene3D Transferase(Phosphotransferase) domain 1 114 338 - -
Vvi19g481 352 MobiDBLite consensus disorder prediction 320 352 - -
Vvi19g481 352 MobiDBLite consensus disorder prediction 334 352 - -
Vvi19g481 352 CDD STKc_IRAK 43 308 - -
Vvi19g481 352 ProSiteProfiles Protein kinase domain profile. 37 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g481 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Vvi19g481 352 PANTHER OS07G0668900 PROTEIN 17 333 - -
Vvi19g481 352 ProSitePatterns Protein kinases ATP-binding region signature. 43 66 IPR017441 GO:0005524
Vvi19g481 352 Gene3D Phosphorylase Kinase; domain 1 10 113 - -
Vvi19g481 352 Pfam Protein kinase domain 39 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g481 352 SUPERFAMILY Protein kinase-like (PK-like) 19 311 IPR011009 -
Vvi19g481 352 PANTHER OS07G0668900 PROTEIN 17 333 - -
Vvi19g481 352 PIRSF TyrPK_CSF1-R 125 239 - -
Vvi19g481 352 PIRSF TyrPK_CSF1-R 36 131 - -
Vvi19g481 352 PIRSF TyrPK_CSF1-R 271 349 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76465 PF00069 Pkinase 4.10E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g481 - - vri:117908972 703.36