Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g49 ATGATTTCTGCTTTTCAACATCCTCATCTTGTGAAGCTCTATGGCTGTTGTATAGAAGGAAATCAGTTGTTGCTGATATACGAGTACATGGAAAACAACAGCCTCACTCATGCTTTGTTTGGCCCCAAAGAATGTCAATTACAATTGGATTGGCCAACTAGACACAGGATCTGTGTTGGCATAGCAAGAGGGTTGGCTTATCTTCATGAAGAATCAAGGCTGAAGATCGTCCACCGAGACATCAAGGCCACAAATGTGCTGCTTGATAAGAATCTTAACCCCAAAATATCTGACTTTGGTTTGGCCAAACTTGATGAAGAGGATAACACCCACATTAGCACTAGGATTGCTGGTACATTGTTTGGAATTGTTGCCTTGGAAATTGTCAGTGGAAGAAGAAACACTACTTATAGGCCAAAAGAGGAATGCATCCATCTTCTTGATTGGTTAATTTCGACAACATTCTTTCTTGCATATGTCGTCTCTTAA 489 40.49 MISAFQHPHLVKLYGCCIEGNQLLLIYEYMENNSLTHALFGPKECQLQLDWPTRHRICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDEEDNTHISTRIAGTLFGIVALEIVSGRRNTTYRPKEECIHLLDWLISTTFFLAYVVS* 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 548334 549288 - Vvi19g49 Vvi19g49 781548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g49 162 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 119 - -
Vvi19g49 162 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 121 154 - -
Vvi19g49 162 SUPERFAMILY Protein kinase-like (PK-like) 2 149 IPR011009 -
Vvi19g49 162 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Vvi19g49 162 ProSiteProfiles Protein kinase domain profile. 1 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g49 162 Pfam Protein tyrosine and serine/threonine kinase 2 135 IPR001245 GO:0004672|GO:0006468
Vvi19g49 162 SMART serkin_6 1 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g49 162 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 121 154 - -
Vvi19g49 162 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 119 - -
Vvi19g49 162 Gene3D Transferase(Phosphotransferase) domain 1 1 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g49 - - - vvi:100265805 281.567
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g49 . . . . . . . . . . . . . . . . . Bhi09g03548 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00829 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000046 4 29 6 9 6 2 3 2 2 7 5 2 11 7 9 9 2 7 5 2 7 7 10 9 9 10 6 5 16 25 233
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76466 PF07714 PK_Tyr_Ser-Thr 2.80E-26 CL0016 Vvi PK