Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g491 ATGCTGAAAAGGAATGAAAGTGGAGTGTTGTGTAAGATGGATAAAGAGAAGGCATATGACCATATTAATTGGAATTTTTTGTTGCTAGTGATGCAAAAAATGGGTTTTGGGGAGAAATGGGCAGGCTGGATTAGTTGGTGTATATCCACTGCAACGTATTCCATTTTGATTAATGACTCATCAATGGGTTTTTTCCATAGCACTAACGGGCTGAGGAAGGGGACCCTCTATCACCTTATTTATTTATACCCACCCAAAAACCAACAAAAGAGGTTGAAATTTTTCTTATATAAATGGGTGCAGTCACCCTCCCAAAACCATATTCTGAACAAGTCTCTCTCAACCATGAGTGCCTTCTTCACAATCTTCTTGGTCCTCCTCCCCATCTTCCTTCTCCTGGCCAGGAGAAGGAGTTTACCAAAAGGGGTCCCTCCAGGTTCACTAGGACTGCCCTTAATAGGCCAAAGCATTGGCCTTCTCCGTGCCATGCGAGCCAACACTGCTGAAAAATGGCTTGAAGAGAGGATAAAGAAGTATGGTCCAATTTCAAAGTTGAGCCTCTTTGGCCAATCAGCTGTCTTTATTTATGGACAGGCTGCAAACAAGCTCATGATAATGGGTGATCGGAATTTGCTGGAGCTTAGTGGAGAAGATCATAAGCGTGTCAGGGGTGCTATTGTATCATTCTTAAAGCCAGAATCCTTGAAGCAGTATGTGGGAAAGATGGATGCAGAGGTTAGGAAGCATCTTGAGATGCATTGGCAAGGCAAGCAAAGGGTCACGGTAATGCCCCTGATGAAGACCCTCACCTTCAACATTATTTGTGGCCTTCTATTTGGGGTTGAGCGAGGAATCCGAAGGGAGAAACTTGTGGGCAGATTCCAGGAAATGATAGAAGGAATTTGGTCAGTTCCGGTTAACTTGCCCTTCACCCGCTACAACCGCAGTCTTCAGGCAAGCACAAAGATCCAAAACATGATAAAGGAACTCATGCGAGAAAAGGAGGTAGAACTTGAGAAGGGTGCGTCTCCTCATCAAGATCTCATCACCTGCTTGCTCAGCATTCATGGCAAAAACAATGAAGAAGTAATTACAGAGAAGGAGATTGTGGATAATGTCATGCTTGTCATGGTTGCCGGGCACGACACTTCTGCTGTTTTGATTACTTTCTTGGTGCGGCTTCTGGCTAATGATCCAGATGTCTATGCGGCTGTTCTGAAAGAACATGAGGAGATAGCAAAAGGCAAGCCCTCAGGGGAGTTCCTAACATGGGAAGACCTGGCAAAGATGAAGTACACATGGAGAGTGGCACTGGAAACTCTGAGGATGGTTCCTCCGGTCTTTGCTGGGTTCAGGACTGTATTGAAAGACATTGAGTTTGGAGGATATCTTATCCCTGAAGGGTGGAAGATATTCTGGGCGACAAATATGACACACATGGACAATAGCATATTCCCGGAGCCAACAAAGTTTGATCCAACAAGATTTGAAAACCAAGCATCAATTCCACCGTACTGCTTCATTCCATTTGGAGGGGGCCCTCGGATATGTCCAGGAATTGAGTTTGCAAGGATTGAAACCCTTGTTACCGTCCATCATCTGGTTACTCGGTTCAAGTGGAAGTTATGCCATACCGACAATTTTTTCGGCAGGAACCCGACGCCAGCACCAACTGGAGGACTACCTATTGAGATTACATCAATGAACCTAATGTAG 1716 44.93 MLKRNESGVLCKMDKEKAYDHINWNFLLLVMQKMGFGEKWAGWISWCISTATYSILINDSSMGFFHSTNGLRKGTLYHLIYLYPPKNQQKRLKFFLYKWVQSPSQNHILNKSLSTMSAFFTIFLVLLPIFLLLARRRSLPKGVPPGSLGLPLIGQSIGLLRAMRANTAEKWLEERIKKYGPISKLSLFGQSAVFIYGQAANKLMIMGDRNLLELSGEDHKRVRGAIVSFLKPESLKQYVGKMDAEVRKHLEMHWQGKQRVTVMPLMKTLTFNIICGLLFGVERGIRREKLVGRFQEMIEGIWSVPVNLPFTRYNRSLQASTKIQNMIKELMREKEVELEKGASPHQDLITCLLSIHGKNNEEVITEKEIVDNVMLVMVAGHDTSAVLITFLVRLLANDPDVYAAVLKEHEEIAKGKPSGEFLTWEDLAKMKYTWRVALETLRMVPPVFAGFRTVLKDIEFGGYLIPEGWKIFWATNMTHMDNSIFPEPTKFDPTRFENQASIPPYCFIPFGGGPRICPGIEFARIETLVTVHHLVTRFKWKLCHTDNFFGRNPTPAPTGGLPIEITSMNLM* 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6307463 6321572 - Vvi19g491 Vvi19g491 781990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g491 571 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 510 519 IPR017972 GO:0005506|GO:0016705
Vvi19g491 571 Pfam Cytochrome P450 207 546 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g491 571 PRINTS P450 superfamily signature 379 396 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g491 571 PRINTS P450 superfamily signature 435 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g491 571 PRINTS P450 superfamily signature 508 517 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g491 571 PRINTS P450 superfamily signature 517 528 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g491 571 PANTHER OS07G0520300 PROTEIN 122 567 - -
Vvi19g491 571 Gene3D Cytochrome P450 135 569 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g491 571 PANTHER CYTOCHROME P450 26 122 567 - -
Vvi19g491 571 SUPERFAMILY Cytochrome P450 136 566 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g491 571 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 5 74 IPR000477 -
Vvi19g491 571 PRINTS E-class P450 group I signature 176 195 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g491 571 PRINTS E-class P450 group I signature 368 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g491 571 PRINTS E-class P450 group I signature 388 414 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g491 571 PRINTS E-class P450 group I signature 474 498 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g491 571 PRINTS E-class P450 group I signature 507 517 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi19g491 571 PRINTS E-class P450 group I signature 517 540 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g491 - - - vvi:100262336 899.812
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g491 . Blo03g01447 Bda07g00354 Bda09g00395 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01210 . . . . . . . . . Bma07g01303 . . . . . . . . Cpe14g00747 . . . . . . . . Cla05g01497 Cam05g1614 . Cco05g1643 Clacu05g1597 Cmu05g1496 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002151 6 2 2 2 2 2 1 2 2 2 2 2 1 1 2 1 2 1 1 2 2 5 1 3 2 2 1 2 1 3 60