Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g498 ATGGAACCGAAGTTGATATTGATACTGATTCTGGTGATCTCTGTAAGTGTGACAGCCGATTACGTTCGTCCAAAGCCCAGAAAAGCTTTGCATTTTCCATGGAAGCCGAAGGCTCCTTCTCTTCCCCAACAGGTGCACATTTCTTTGTCAAGTGAGAAGCACATGCGAATCACATGGATCACTGATGATGAATATGCCCCTTCAATTGTTCAATATGGAACATCACCGGGGAAATACACATCCATAACTCTAGGTGGAAGCACCTCCTATAGTTATTTATTCTATAGCTCGGGAAAGATACACCACACTGTCATTGGGCCTCTGGAACATGACACTATTTACTACTATCGATGTGGAGGACAAGGTCCTGAATTCCAGCTCAAGACCCCTCCAGCTCAGTTCCCAATTACTTTTGCTGTGGCTGCTGATCTGGGTCAGACTGGCTGGACGAAGTCAACACTAGATCACATAGATGGATGCAACTATGACGTGCATCTGCTTCCTGGAGACCTTTCATATGCAGATTACTTGCAGCGTCGGTGGGACACATTTGGTGAGCTAGTGCAGCCACTTGCAAGTGCAAGGCCGTGGATGGTAACAGAAGGAAACCATGAACAGGAGAACATTCCATTTTTTAAGGATGGTTTTGAATCCTATAATTCTAGATGGACTATGCCATATCAAGAGAGTGGATCTCCCTCAAATCTATATTATTCTTTTGAAGTTGCGGGGGTGCATGTTGTCATGCTTGGTTCATATGCTGCTTATGATCTGAACTCAAATCAATATAGCTGGCTAAAGACTGATCTTTCAAGGGTGGATCGAAAAAGGACGCCCTGGCTACTTGTGCTATTACATGTTCCATGGTACAACAGCAACAAGGCTCATCAAGGTGAAGGGGACAGGATGATGGAAACCTTGGAGCCATTGCTTTATGCTGCTAATGTTGATTTAGTGTTCGCTGGCCATGTGCATGCTTATGAGCGCTCAAAACGTGTCTACAATGGAAGGTCAGATCCTTGTGGTCCTATCCACATAACAATTGGTGATGGAGGAAATAGGGAAGGCTTAGCTACTAGGTATAATGATCCACAGCCAGAGTGGTCAGTCTTCCGTGAAGCAAGTTTCGGTCATGGCGAACTCAAGATAGTGAATTTGACCCATGCCTTCTGGAGCTGGCACAGGAACGATGATGATGAGCCAGTGCGGTCTGATGAGGTCTGGATAACCTCCTTGGTCGGTTCAGGATGTCATGCTGGGAAAGGGCATGGACAAAGGAAAATACTCATGGAACCTTAA 1299 45.5 MEPKLILILILVISVSVTADYVRPKPRKALHFPWKPKAPSLPQQVHISLSSEKHMRITWITDDEYAPSIVQYGTSPGKYTSITLGGSTSYSYLFYSSGKIHHTVIGPLEHDTIYYYRCGGQGPEFQLKTPPAQFPITFAVAADLGQTGWTKSTLDHIDGCNYDVHLLPGDLSYADYLQRRWDTFGELVQPLASARPWMVTEGNHEQENIPFFKDGFESYNSRWTMPYQESGSPSNLYYSFEVAGVHVVMLGSYAAYDLNSNQYSWLKTDLSRVDRKRTPWLLVLLHVPWYNSNKAHQGEGDRMMETLEPLLYAANVDLVFAGHVHAYERSKRVYNGRSDPCGPIHITIGDGGNREGLATRYNDPQPEWSVFREASFGHGELKIVNLTHAFWSWHRNDDDEPVRSDEVWITSLVGSGCHAGKGHGQRKILMEP* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6349896 6356238 - Vvi19g498 Vvi19g498 781997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g498 432 SUPERFAMILY Purple acid phosphatase, N-terminal domain 29 131 IPR008963 GO:0003993|GO:0046872
Vvi19g498 432 Gene3D - 133 415 IPR029052 -
Vvi19g498 432 SUPERFAMILY Metallo-dependent phosphatases 135 402 IPR029052 -
Vvi19g498 432 Gene3D - 41 132 - -
Vvi19g498 432 PANTHER PURPLE ACID PHOSPHATASE 18 5 423 - -
Vvi19g498 432 Pfam Calcineurin-like phosphoesterase 137 327 IPR004843 GO:0016787
Vvi19g498 432 Pfam Iron/zinc purple acid phosphatase-like protein C 342 399 IPR025733 -
Vvi19g498 432 Pfam Purple acid Phosphatase, N-terminal domain 42 122 IPR015914 GO:0003993|GO:0046872
Vvi19g498 432 CDD MPP_PAPs 133 411 IPR041792 -
Vvi19g498 432 PANTHER ACID PHOSPHATASE RELATED 5 423 IPR039331 GO:0003993
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g498 K22390 ACP7; acid phosphatase type 7 - vvi:100243461 908.286
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g498 Blo03g00564 . . . . . . . . . Cma01g01134 Cma09g00948 . Car09g00861 . Cpe06g00763 Cpe02g00767 . . . . . . . . . . . . . . . . . . Lsi04g01205 . . . . . . . Bpe11g00545 . . Bma14g00341 . Cmo01g01185 Cmo09g00946 . . . Car16g00545 . . . . . . . . . Cla05g01492 Cam05g1608 . Cco05g1637 Clacu05g1588 Cmu05g1491 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008020 0 1 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36