Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g499 ATGGGAGGTGTTGGCAAGACAACCTTGGTGAAAGAAGTTGGAAAGAAAGTGAAAAAAGACAAGCTTTTTGATGAAGTTGCAATTGCAGTGGTGTCTCAGGCTCCGGACCTGATAAAGATTCAAGATGAAATTGCAGATGCATTGGGTCTGGAATTTCATGAGGAGAAAGAAATTGGAAGAGCGGGTCGGCTTCGTGAAAGACTGAAGACAGAGAAGAGGGTCCTAGTAATCTTGGATGACGTTTGGGAGAGACTTGACTTGGGGGCAATAGGAATTCCTCATGGTGTTGATCACAGGGGCTGCAAAATTCTTCTCACTACACGACGTGAACATACATGCAATGTGATGGGAAGCCAAGCAACAAAGATTCTTCTAAATATCTTAAATGAACAAGAATCATGGGCCTTGTTTAGGTCAAATGCTGGTGCAACTGTTGACTCCCCTGCTGTCAATGTTGTGGCAACAGAAATTGCAAAGAAGTGCGGAGGTTTACCTCTAGCGCTTGTAGCAGTTGGAAGGGCTCTAAGTGATAAAGACATAGATGGATGGCAGGAAGCGGCCAAGCAACTTAAGGAGTGTAAACCTATGAACATCCAAGATGTGGATGCAGACTTTTTTTCGTGTCTTAAGCTTAGTTTCGACTATCTTCAAGGAGAGGAAATCAAGTCAATCTTCTTACTGTGCTGTCTATTTCCAGAAGATCGCAACATTGAACTGGAGTACTTGACAAGGCTTGCAATGGGGCAAGGATTGCTTGAAGATGTTGAGACAGTAGAAGAAGGAAGAAGGCGGGTACGAACACTGATCAAGGGACTTAAAGCTTCTTGTCTGTTAATGGATGGCGATAAGAGTAAAGGGTCTCTGAAAATGCATGACCTTGTCCGTGTCTTTGCCATATCAATTACATCCACTGAAAAGTATGCCTTCATGGTGAAAGCTGGGGTGGGTTTGAAGAACTGGCCAAAGAAAGGTACTTTTGAGCATTATGCTTTGATATCATTGATGGCGAACAATATTTCTAGTCTTCCAGTTGGTCTGGAATGTCCAAAACTGCATACTTTATTGTTGGGTGGGAACCGTGGCTTAAAAATATTTCCGGATGCTTTCTTTGTGGGAATGAAAACACTCAAGGTTCTGGATTTAACTGCAATTAGTAAAAAGCTCTATAGGTATTCTCTTCACATCACACCACTACCAGCATCCCTCCAACTCCTTACTGACCTCAGGATGCTTCACCTCCATCATCGGAAGTTAGGTGATATATCTATACTTGGAAAGCTGAAGAAGCTGGAGATCCTTAGCTTTTTTGCTTCACATATCAGCGAGTTGCCCAAGGAGATGGGAGAACTGAAGAATCTGAAGTTGTTGGATCTTACCTACTGCCGATCTTTAAAGAAAATTCCACCTAACTTGATATCAGGTCTGTCAGCATTAGAAGAACTATACATGAGAGGAAGCTTTCAACAATGGGATGTTGGTGGAACAACCATAGAAAGAAGCAGTGCAAGTCTATCTGAGCTTAACTCACTACTCAACTTGACCACTTTACATGTCGAGATAATCAATGCCAAATGTATTCCAAATAGTTTCTTATTTCCAAATCAGTTAAGGTTTCAGATATACATCGGTTCCAAGTTATCTTTTGCAACGTTCACAAGAAAGTTAAAATATGATTATCCGACATCTAAAGCCCTGGAACTCAAAGGGATTCTGGTTGGAGAGGAACATGTTCTGCCACTCTCTTCTTTAAGAGAATTGAAATTGGACACCTTGCCTCAATTGGAGCATTTATGGAAGGGGTTCGGTGCTCACTTAAGCCTCCATAATCTTGAAGTTATTGAAATTGAAAGATGTAACAGATTGAGGAATCTCTTTCAGCCTTCTATTGCTCAGAGTTTGTTTAAACTGGAGTACCTCAAAATAGTAGACTGTATGGAGTTGCAGCAAATTATAGCTGAGGATGGGCTAGAGCAAGAAGTATCAAATGTTGAAGACAAGAAATCTCTCAACCTTCCAAAACTGAAAGTTCTGGAGTGTGGAGAAATATCAGCAGCGGTGGATAAGTTTGTGCTCCCTCAGTTAAGCAACTTGGAGCTTAAAGCTCTGCCGGTCCTTGAGAGCTTCTGTAAGGGAAATTTTCCATTTGAATGGCCATCACTAGAAGAATCAAGTCTCACAGTTGCACTATCAATTCTTGATGGAGACAATTATGAAACTTGGGCTGTTAGAATGACAGTTCATCTACAAGCACTTGATGTTTGGGAAGCAGTGGAAGAAAATTATGAAGTTCCTCCCCTAGGAGCCAATCCAACTGTGGCTCAAATGAAGTTGCATAAAGAAAGAAGGACAAGAAAGGCTAAAGCGAAAGCTTGCTTGTTTGCTGCAGTTTCACCATCAATTTTCATCAAAATCATGAAAATTGATTCAGCTGCAGAAATTTGGGAGTATCTCAAGGAGGAATACAAAGGAGATGAAAGAATCAAGAACATGCAGGTGATGAACTTGATTCGAGAATTTGAAATGAAGAAAATGAGGGAGTCTGATGCTGTTAAAGACTATGCTGCACAACTTCTTTCAATAGCAGACAAAGTTAGGCTGCTTGGAAAAGAATTTTCCAATGAGAAGATTGTTCAAAAGATATTGGTTACACTTCCTGAGAAATATGAAGCTACAATTTCCTCTTTGGAGAATTCAAAAGATCTGTCAACTATTAGCTTGACAGAATTATTACATTCCTTGGAGGCTGTGGAACAAAGAAGACTCATGAGACAAGGAGATACTGCAGAAGGAGCATTTCAAGCAAGAATGCAGAAAAATGCAGGTCATAAAAATGGAAAGGTGAACAACAACAAGTCGTGTGGCAACAACCAGAAAAATGGAGTTTTTCCACCTTGTCCTCATTGCAAGAAGACAAATCATTCTCCAAAAAAATGTTGGTGGAGACCAGATGTGAAATGCAACAAGTGTGGTAAACAAGGACATGTGGAGAGGATTTGCAAAAATCAACAGCAGGAAGAAACTAATGCAGTAGTTGACTATTGTCAGGAGGAGCAATTGTTTGCAGCAACGTGTTTTGCTAATAAAAGCACCTCTAAAAGTTGGCTTGTGGATAGTGGTTGTACAAACCACATGACAAATAATCAAGATCTCTTTAGAGAACTTGATAGAACAACTATTTCCAAAGTCAGAATTGGAAATGGTGAGTATATTCCAGTGAAGGGCAAAGGAACGGTTGCTATCGAAAGCCAAACAGGTTTGAAACTCATTTATGATGTTTTGTTTGTGCCTGACATTGACCAAAACTTACTCAGTGTTGGACAGCTCGTTGAGAAAGAATTTAAAGTTTATTTTGAAGATAGGAATTGCATTATCAAGGATGCTGAAGGCAAAGAGGTGTTCAACATAAAAATGAAGGGCAAGAGTTTTGCCTTGAATTTACTGGAAGATGAGCATACTGCTATTTTACAACAAGATAGCACAACAATGTTTTGGGACAGAAGGGTCGAGCACTTTCATCATGATGATGTGCTCTACATGAAGAAAAATCAAATAGTTGAAGGACTTCCTGACTTAGAAAAAGATCTTCCTATATGTGCTACTTGTCAATATGGGAAGCAAACTAAACTTCCCTTTCCAAAGAAAATATCCTGGAGAGCAACCCAAAAACTGCAACTGGTGCATACTGATGTTGTAAAGGCCAGAGTAAAAATCTCTAAACAGGATGATCATGAAAAAACAAAAAGTCTTTGTGAAAGACTAAAGATGGAGAAGAGGATCCTAATAATCTTGGATGATGTCTGGAAGATACTTGACTTGGCAGCCATAGGAATTCCCCATGGGGTTGATCACAAGGGATGCAAAATTCTTCTCACTACACGTCTTGAACATGTATGTAATGTAATGGGAGGCCAAGCGACAAAGCTTCTTTTAAATATCTTAGATGAACAAGAATCATGGGCCTTGTTTAGATCAAATGCTGGTGCGATTGTTGATTCCCCTGCTCAACTTCAGGAGCATAAACCTATGAACATCCAAGACATGGATGCAAACATTTTTTCTTGTCTGAAGCTCAGTTTTGATCATCTCCAAGGAGAGGAAATCACCTTGATCTTCTTGCTATGCTGTCTATTTCCAGCAGATTGTGATATTGAAGTGGAGTATTTAACAAGGCTTGGAATGGGGCAGAGATGCTTTAAGGACATTGCAACAGTAGATGAAGCAAGGAGACGGGTACGTACACTGATCAATGGCCTTAAATCCTCTAGTCTATTAATGGAGAGTGATAAATGTCAAGGGTGTGTGAAAATTCATGATCTTGTCCGGGCCTTTGCCATATCAATCACATGTGCAGACCAGTACCGATTCATGGTAAAATCAAGGGATGGATTGAAGAATTGGCCAAAGAAAGACACGTTTGAACATTATGCAGTGATCTCATTGATGGCCAACTACATTTCTAGTCTTCCTGTTGGGTTGGAATGTCCAAGACTTCATACTTTATTGCTGGGGAGCAACCAGGGCTTAAAAATTTTTCCTGATGCTTTCTTTGAGGGGATGAAAGCACTTAGGGTTCTGGATGTAGGTGGAGTTCGTGAAATATTTTACAATCATTCTCTTCATGTCACACCACTACCAACATCAATCCAACTCCTTGCAGACCTCAGGATGCTTCACCTTCATCATCGTAAGTTAGGTGACATATCTGTACTTGGAAAGCTAAAGAAACTTGAGATCCTTAGCCTTTTTGCTTCATGTATCAAAGAGTTGCCGAAGGAAATTGGAGAACTGAAGAGTCTAAGGTTGTTGGATCTTACCTACTGTCGATCACTAAAGAAAATTCCACCAAACTTGATATCAGGTCTATCAGGATTGGAAGAACTATACATGAGAGGAAGCTTTCAACAATGGGATGTTTGTGGAGCAACCAAGGAGAGAAGGAATGTGTGCTTAACTGAGCTTAAATCACTACCCTACTTGACCATTTTGCATGTTGAGATATTCAGTTCCAAGTGTCTTCCAAAAGACTTCCTATTGCCAACTTTGTCGCGGTTTCAAATATACATAGGCTCCAAGTTATCTTTCACAATATTCACAAAGAAGTTGAAATATGATTATCCAACTTCAAGAACCCTGGAACTTAAAGGCATTGATAGCCCCATACCAGTTGGGGTTAAGGAATTGTTTGAGAGAACAGAGGATCTAGTATTGCAACTGAATGCCTTGCCTCAACTGGGGTATGTATGGAAGGGGTTCGATCCCCATTTAAGTCTCCATAACCTTGAAGTTCTTGAAATTCAAAGCTGTAACAGATTAAGAAATCTCTTTCAACCCTCCATGGCTCTGAGCTTGTCCAAACTGGAATACTTCAAGATATTAGACTGCACAGAGCTGGAGCAAATTGTAGCAGACGAGGATGAGTTGGAACATGAACTGTCAAACATTCAGGTTGAGAAACCTTTTCTCGCTCTCCCAAAGCTGAAAGTTCTAAAAGTAAAAGGAGTGGACAAGATTGTGCTCCCTCAGTTAAGCAGTCTGAAGCTAAAATCTCTACCAGTGCTCGAGAGCTTCTGTATGGGGAACATTCCATTTGAATGGCCATCACTTGAAAAAATGGTCCTGAAGAAATGCCCCAAAATGACCACTTTTTCTGTAGCTGCTTCTGATGTAGTAAATCACACCCCTAAATTAAAGAAGATCCGGGTTGATGGTAAAATGATTGACAACCATACTGATCTGAATATGGCCATCAATCACCTCTTTAAAGGAAAGGAAATGGAGTTGGATGTGAAAGCTACCCCAAGTGAGATTGTTGTGGATTCCTAG 5823 40.29 MGGVGKTTLVKEVGKKVKKDKLFDEVAIAVVSQAPDLIKIQDEIADALGLEFHEEKEIGRAGRLRERLKTEKRVLVILDDVWERLDLGAIGIPHGVDHRGCKILLTTRREHTCNVMGSQATKILLNILNEQESWALFRSNAGATVDSPAVNVVATEIAKKCGGLPLALVAVGRALSDKDIDGWQEAAKQLKECKPMNIQDVDADFFSCLKLSFDYLQGEEIKSIFLLCCLFPEDRNIELEYLTRLAMGQGLLEDVETVEEGRRRVRTLIKGLKASCLLMDGDKSKGSLKMHDLVRVFAISITSTEKYAFMVKAGVGLKNWPKKGTFEHYALISLMANNISSLPVGLECPKLHTLLLGGNRGLKIFPDAFFVGMKTLKVLDLTAISKKLYRYSLHITPLPASLQLLTDLRMLHLHHRKLGDISILGKLKKLEILSFFASHISELPKEMGELKNLKLLDLTYCRSLKKIPPNLISGLSALEELYMRGSFQQWDVGGTTIERSSASLSELNSLLNLTTLHVEIINAKCIPNSFLFPNQLRFQIYIGSKLSFATFTRKLKYDYPTSKALELKGILVGEEHVLPLSSLRELKLDTLPQLEHLWKGFGAHLSLHNLEVIEIERCNRLRNLFQPSIAQSLFKLEYLKIVDCMELQQIIAEDGLEQEVSNVEDKKSLNLPKLKVLECGEISAAVDKFVLPQLSNLELKALPVLESFCKGNFPFEWPSLEESSLTVALSILDGDNYETWAVRMTVHLQALDVWEAVEENYEVPPLGANPTVAQMKLHKERRTRKAKAKACLFAAVSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESDAVKDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEATISSLENSKDLSTISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNGKVNNNKSCGNNQKNGVFPPCPHCKKTNHSPKKCWWRPDVKCNKCGKQGHVERICKNQQQEETNAVVDYCQEEQLFAATCFANKSTSKSWLVDSGCTNHMTNNQDLFRELDRTTISKVRIGNGEYIPVKGKGTVAIESQTGLKLIYDVLFVPDIDQNLLSVGQLVEKEFKVYFEDRNCIIKDAEGKEVFNIKMKGKSFALNLLEDEHTAILQQDSTTMFWDRRVEHFHHDDVLYMKKNQIVEGLPDLEKDLPICATCQYGKQTKLPFPKKISWRATQKLQLVHTDVVKARVKISKQDDHEKTKSLCERLKMEKRILIILDDVWKILDLAAIGIPHGVDHKGCKILLTTRLEHVCNVMGGQATKLLLNILDEQESWALFRSNAGAIVDSPAQLQEHKPMNIQDMDANIFSCLKLSFDHLQGEEITLIFLLCCLFPADCDIEVEYLTRLGMGQRCFKDIATVDEARRRVRTLINGLKSSSLLMESDKCQGCVKIHDLVRAFAISITCADQYRFMVKSRDGLKNWPKKDTFEHYAVISLMANYISSLPVGLECPRLHTLLLGSNQGLKIFPDAFFEGMKALRVLDVGGVREIFYNHSLHVTPLPTSIQLLADLRMLHLHHRKLGDISVLGKLKKLEILSLFASCIKELPKEIGELKSLRLLDLTYCRSLKKIPPNLISGLSGLEELYMRGSFQQWDVCGATKERRNVCLTELKSLPYLTILHVEIFSSKCLPKDFLLPTLSRFQIYIGSKLSFTIFTKKLKYDYPTSRTLELKGIDSPIPVGVKELFERTEDLVLQLNALPQLGYVWKGFDPHLSLHNLEVLEIQSCNRLRNLFQPSMALSLSKLEYFKILDCTELEQIVADEDELEHELSNIQVEKPFLALPKLKVLKVKGVDKIVLPQLSSLKLKSLPVLESFCMGNIPFEWPSLEKMVLKKCPKMTTFSVAASDVVNHTPKLKKIRVDGKMIDNHTDLNMAINHLFKGKEMELDVKATPSEIVVDS* 1941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6359411 6371752 - Vvi19g499 Vvi19g499 781998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g499 1940 ProSiteProfiles Zinc finger CCHC-type profile. 985 1001 IPR001878 GO:0003676|GO:0008270
Vvi19g499 1940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 228 IPR027417 -
Vvi19g499 1940 Gene3D - 1211 1307 IPR027417 -
Vvi19g499 1940 PANTHER PHOSPHATASE, PUTATIVE-RELATED 1249 1331 - -
Vvi19g499 1940 PANTHER PHOSPHATASE, PUTATIVE-RELATED 1836 1896 - -
Vvi19g499 1940 PANTHER PHOSPHATASE, PUTATIVE-RELATED 2 548 - -
Vvi19g499 1940 PANTHER PHOSPHATASE, PUTATIVE-RELATED 1343 1736 - -
Vvi19g499 1940 Pfam gag-polypeptide of LTR copia-type 782 920 - -
Vvi19g499 1940 Gene3D Ribonuclease Inhibitor 317 731 IPR032675 -
Vvi19g499 1940 PANTHER - 1836 1896 - -
Vvi19g499 1940 PANTHER - 2 548 - -
Vvi19g499 1940 PANTHER - 1249 1331 - -
Vvi19g499 1940 PANTHER - 1343 1736 - -
Vvi19g499 1940 Gene3D - 213 300 IPR036388 -
Vvi19g499 1940 Gene3D - 1354 1445 IPR036388 -
Vvi19g499 1940 Gene3D Ribonuclease Inhibitor 1446 1687 IPR032675 -
Vvi19g499 1940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1237 1367 IPR027417 -
Vvi19g499 1940 Gene3D - 128 212 IPR042197 -
Vvi19g499 1940 SUPERFAMILY Retrovirus zinc finger-like domains 957 1003 IPR036875 GO:0003676|GO:0008270
Vvi19g499 1940 SMART c2hcfinal6 985 1001 IPR001878 GO:0003676|GO:0008270
Vvi19g499 1940 SMART c2hcfinal6 964 980 IPR001878 GO:0003676|GO:0008270
Vvi19g499 1940 Gene3D - 1 126 IPR027417 -
Vvi19g499 1940 Gene3D Ribonuclease Inhibitor 1734 1909 IPR032675 -
Vvi19g499 1940 Pfam NB-ARC domain 1226 1331 IPR002182 GO:0043531
Vvi19g499 1940 Pfam NB-ARC domain 1 212 IPR002182 GO:0043531
Vvi19g499 1940 Coils Coil 1797 1817 - -
Vvi19g499 1940 Pfam Domain of unknown function (DUF4219) 732 758 IPR025314 -
Vvi19g499 1940 SUPERFAMILY L domain-like 290 709 - -
Vvi19g499 1940 SUPERFAMILY L domain-like 1433 1905 - -
Vvi19g499 1940 PRINTS Disease resistance protein signature 68 82 - -
Vvi19g499 1940 PRINTS Disease resistance protein signature 161 175 - -
Vvi19g499 1940 PRINTS Disease resistance protein signature 448 464 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g499 - - - vvi:100258845 1090.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g499 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001086 0 14 1 0 0 3 0 3 1 1 0 2 7 0 2 8 2 0 0 2 2 2 7 0 0 0 0 0 1 2 60