Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g502 ATGGTTCAGTTCCTTTACACTATTACCGTATATCTGAATACAAGTTTTCCTTTCCTTTTTTGGGTTCCCGTGGGTAATTTCGCTTCCAATTTTCAGCTTTTTTCTTCTTTTCAGAATACTCAAGGAAATCAGGGTGAGAGTGATCCAAATAACACAACAATATTTGTTGGTGGTTTGGACTCCAATGTTACTGATGACTATTTGAGACAAGTGTTTAGCCAATATGGTGAATTGGTTCATGTGAAAATACCAGTAGGCAAGCGCTGTGGGTTTGTTCAATTCGCTAATAGAGCTTGTGCTGAGCAAGCTTTAGCTGGGTTAAATGGTACTCAATTAGGAGCACAGAGTATTCGTCTTTCATGGGGGCGTAGTCCTTCGAACAAACAGGCCCAGCCAGATCAGGCCCAGTGGAATGGTGGATATTATGGATATGCTCAAGGATATGAGGCATATGGGTATGCGCCACCTCCTCAAGACCCTAACATGTACTATGGAGCCTATCCTGGATATGGAAATTACCAGCAGCCACAGCAAGGAAAAGCTTCTATGCTTATAAAGCTAGAATCCCCAGTACTCTCTCATTCTGCCTGGTTGGATGAGAATTGTAGGACACTGGATGCTACATGTTTGTTGGTGGGGCCTGACTTACGAAAAATATTATTGATCTGTTGCTGA 675 42.37 MVQFLYTITVYLNTSFPFLFWVPVGNFASNFQLFSSFQNTQGNQGESDPNNTTIFVGGLDSNVTDDYLRQVFSQYGELVHVKIPVGKRCGFVQFANRACAEQALAGLNGTQLGAQSIRLSWGRSPSNKQAQPDQAQWNGGYYGYAQGYEAYGYAPPPQDPNMYYGAYPGYGNYQQPQQGKASMLIKLESPVLSHSAWLDENCRTLDATCLLVGPDLRKILLICC* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6416896 6422786 + Vvi19g502 Vvi19g502 782001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g502 224 SUPERFAMILY RNA-binding domain, RBD 37 150 IPR035979 GO:0003676
Vvi19g502 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 117 IPR000504 GO:0003723
Vvi19g502 224 CDD RRM3_NGR1_NAM8_like 51 122 - -
Vvi19g502 224 Gene3D - 33 134 IPR012677 -
Vvi19g502 224 SMART rrm1_1 53 120 IPR000504 GO:0003723
Vvi19g502 224 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 33 177 - -
Vvi19g502 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 124 IPR000504 GO:0003723
Vvi19g502 224 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 33 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g502 - - - vvi:100250363 271.937
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g502 . . Bda07g00359 . . . . Bma13g01053 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00546 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002064 4 5 3 6 2 2 0 1 1 0 0 2 2 2 2 3 2 6 1 2 1 2 2 2 1 2 2 3 2 2 65