Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g503 ATGACTGAGATTCAGAGAGCTTCGCTGCCGCACTCACTTTGCGGCCGAGATATTCTCGGTGCGGCAAAAACTGGGTCCGGAAAGACTCTGGCGTTTCTGATTCCGGTTCTGGAGAAGTTATACAGATTGAGATGGGGTCCAGAGGATGGAGTTGGAAGCATCATTATATCACCCACAAGGGAATTAACTGGTCAACTTTTTGATGTATTGAAGTCTGTTGGAAAGTACCATTCTTTTAGTGCTGGCCTGCTAATTGGTGGCCGCAAAGATGTTGGCATGGAGAAAGAACATGTAAATGAACTGAACATCTTGGTCTGCACTCCTGGGAGGCTTCTTCAGCACATGGATGAAACTCCAAATTTTGATTGTTCACAACTTCAGTGTTTACAAAGGAAGAGTAAAGCTGACAGGGCGCACTTTTTCAATAAGGCACATATCTTGGCAAGCAAGTGCTATAACTTGGGATATATATGTCAATTTGAGGAGAAAGAAAGTTTACTGGTTTTTTGCTTATGTAACAATTTCCTACCCATTCCATTTCATTTATTTTTAATTATTTACATTATATCTATAGATGGACATCAAGTGGTTGATATTATCCCTTTAGGACTAGAACTTCCTGTTTCAGAGGGTGAATCTATTAAACTTGATCATCTATTAATGAGGAATTCCAATATGGGCGTAGTTGGTCAGGGAGATGCAGAAATATTACTCATTGATTTTTATATGATGCATCTTTGGATCTGTGCATTTGTGATTAAAATGTGTTTCTTAGTCAAATTGGATGAAATTGGGGTAGTTTGGTTTATTTATAAATTTTCAAAAGTAAATTTGGTTTTCCTCGCCTCTTCATTTCTGCAAGAGATCTTGGGCATCTTTTTGTTTCAATGCTTCTGTATTAATAGTCCTCTAATATCTGTTTCAGTCATCTTTCAGTGTCATTTTTACTTCTCTTTTATTATCACGATTTACACTGCATTATATCCCTGTCATCATGTTTACTTGACTGTAAAATTCGTATTTGAAGCATTCAAGAAACTGCGTCCAGGAATCCCATTGAAGTGTCTTCATGGGAAGATGAATCAACAGAAAAGGATGGGAATATATTCCCAGTTCTGTGAGAGTCGTTCAGTACTCTTCTCAACTGATGTTGCTTCAAGAGGTCTTGATTTCAATAAGGGAGTTGACTGGGTCATTCAGGTAGATTGTCCAGAAGATGTTGCAGCTTACATACATAGAGTTGGTCGCACTGCTCGCTACCATTCTGAAGGAAGGTCAGTTTTATTCCTGGTGCCTTCAGAGACAGAAATGCTGAAAAAATTAGAAGTGGCAAAAATACCGATTCACCTTATCAAGGCTAACACAAAACGACTGCAACAGGTGTCTAGATTATTACAAGATTTACTAGTTAAGTATGATGATATGCGATATCTGGCACAAAAAGCCTTCATCACATATTTGAGGTCCATTCATAAGCAAGGAGACAAAGAGGTCTTTGATGTGATGAGACTACCAGTTGAGGAGTTCTCTGTATCATTGGGTTTACCAATGACCCCAAAAGTTCGCTTTCTAAATCAGAAAACCAAGAGCAAATTAATGCCAGCAGAAACCTCTCTTCATCTACCTGAAATTTCTGACGAGGAGAATTTGTCAGAGATTCCTAGAAGTAAAGAAGTTACTGTGGGATCCAAGGAGCTGGAGGTGGATAAAGGTTTTCTTTTAACAGAGTCCCCTGATGAAGCTGAAGGACAAGCAACAGAAATTGAAGCTGTTGGCCTAGGAACTAGGGTTACAAAGAAAAAGAAGCTGAAGATCAATGTTCATAGACCAGTGGGGTCTAGGGTAGTTTTTGACGAAGAAGGCAACACACTTCCTCCATTAGCAAAAATTGCTGACAGAGACAGTGGCAACGACTTGCTTCAACTTGACAAAGTGAAAGAAAGATATGCAAAGCTAAGGGAAGAGATGAAACCGCGAGACAAAGAAGACAAGCTTCTGCACCGTCAGCGTCTCAAAGATAAGCGAATGAAAGAGAAGATGAAGATGAAGAGCAGGAGGAGCGAAGAAGAGTATGAAGAGGACGAGGAAGATCTTTCTGGGTCAGACGCAGAAGCAGCCGCAGGTAGAAAGAGTAAAAGGTCAAAAATATATTTTGACAGCGATAATGGTGAAAGTGAGGGAGAAGGAAATGAGGATAAAGTTAAATTCAGTGCTGAGTCAATTTCTTTGGCAGAGCAAGAAGCCCTGGCTCTGAAGCTGCTGAATTCAATGCACTCTTAA 2280 39.82 MTEIQRASLPHSLCGRDILGAAKTGSGKTLAFLIPVLEKLYRLRWGPEDGVGSIIISPTRELTGQLFDVLKSVGKYHSFSAGLLIGGRKDVGMEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQCLQRKSKADRAHFFNKAHILASKCYNLGYICQFEEKESLLVFCLCNNFLPIPFHLFLIIYIISIDGHQVVDIIPLGLELPVSEGESIKLDHLLMRNSNMGVVGQGDAEILLIDFYMMHLWICAFVIKMCFLVKLDEIGVVWFIYKFSKVNLVFLASSFLQEILGIFLFQCFCINSPLISVSVIFQCHFYFSFIITIYTALYPCHHVYLTVKFVFEAFKKLRPGIPLKCLHGKMNQQKRMGIYSQFCESRSVLFSTDVASRGLDFNKGVDWVIQVDCPEDVAAYIHRVGRTARYHSEGRSVLFLVPSETEMLKKLEVAKIPIHLIKANTKRLQQVSRLLQDLLVKYDDMRYLAQKAFITYLRSIHKQGDKEVFDVMRLPVEEFSVSLGLPMTPKVRFLNQKTKSKLMPAETSLHLPEISDEENLSEIPRSKEVTVGSKELEVDKGFLLTESPDEAEGQATEIEAVGLGTRVTKKKKLKINVHRPVGSRVVFDEEGNTLPPLAKIADRDSGNDLLQLDKVKERYAKLREEMKPRDKEDKLLHRQRLKDKRMKEKMKMKSRRSEEEYEEDEEDLSGSDAEAAAGRKSKRSKIYFDSDNGESEGEGNEDKVKFSAESISLAEQEALALKLLNSMHS* 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6423468 6435344 - Vvi19g503 Vvi19g503 782002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g503 759 Pfam Helicase conserved C-terminal domain 342 420 IPR001650 -
Vvi19g503 759 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 2 130 - -
Vvi19g503 759 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 337 541 - -
Vvi19g503 759 Pfam Apocytochrome F, C-terminal 187 254 IPR002325 GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361
Vvi19g503 759 SMART DUF4217_3 460 523 IPR025313 -
Vvi19g503 759 SMART ultradead3 1 186 IPR014001 -
Vvi19g503 759 Coils Coil 677 697 - -
Vvi19g503 759 CDD SF2_C_DEAD 336 430 - -
Vvi19g503 759 PANTHER RNA HELICASE 337 541 - -
Vvi19g503 759 PANTHER RNA HELICASE 2 130 - -
Vvi19g503 759 SUPERFAMILY Rudiment single hybrid motif 185 222 IPR011054 -
Vvi19g503 759 MobiDBLite consensus disorder prediction 702 734 - -
Vvi19g503 759 ProSiteProfiles Cytochrome f family profile. 155 285 IPR002325 GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361
Vvi19g503 759 MobiDBLite consensus disorder prediction 652 734 - -
Vvi19g503 759 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 309 469 IPR001650 -
Vvi19g503 759 PRINTS Cytochrome F signature 196 216 IPR002325 GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361
Vvi19g503 759 PRINTS Cytochrome F signature 217 237 IPR002325 GO:0005506|GO:0009055|GO:0015979|GO:0020037|GO:0031361
Vvi19g503 759 Pfam Domain of unknown function (DUF4217) 464 521 IPR025313 -
Vvi19g503 759 Pfam DEAD/DEAH box helicase 2 129 IPR011545 GO:0003676|GO:0005524
Vvi19g503 759 Gene3D - 334 535 IPR027417 -
Vvi19g503 759 MobiDBLite consensus disorder prediction 652 669 - -
Vvi19g503 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 445 IPR027417 -
Vvi19g503 759 Gene3D - 1 130 IPR027417 -
Vvi19g503 759 Gene3D - 184 221 - -
Vvi19g503 759 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 9 129 IPR014001 -
Vvi19g503 759 SMART helicmild6 338 421 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g503 K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4 [EC:3.6.4.13] - vvi:100246858 771.926
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g503 . . . . Bpe09g00180 . . Bma13g01054 . . . . . . . . . . . . . . . . Cla10g00512 Cam10g0507 Cec10g0524 Cco10g0511 Clacu10g0528 Cmu10g1354 Cre10g0758 . . Cone14ag1140 Cone15ag1158 . Csa03g00520 . Cme06g02259 . Blo10g00825 . Bda12g00904 . . . . Sed14g0162 . . Cma04g00948 . . . . Cpe01g00859 Bhi11g00629 Tan01g1698 Cmetu12g0970 . . Mch10g1261 . . . . . . . . Lsi05g00605 . Chy06g01810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010643 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32