Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g506 ATGGAGAAAACTGCAAGTGGTTCTGTTATGAGGAATAGAAGGTTGGAGAGTTTCTTCAACGCAAGTCCTATTCCAAACATGGGGGTGTCCTGGAAAATAGGCTCCAAGAAAGGGGTAGGAGAGAAGCCGAAAACCGATTTGTATGTTGAGGATGATGGATGGCTGTCTATACTGATATCCTGGATTCGGATTGTCACATGTTTTGTGTCGATGATGGTTACTACCTTTGTGTGGGCCTTAATCATGCTTGTGCTTCTTCCATGGCCTTATGAGAGACTAAGGCAAGGGAATATTTATGGGCATGTGACTGGTCGAATGCTGTGCTATTTAGCAGAAAAGATGATGAAAAGCAGATTTCTCGGGTGTCCTTTGACTGAGATGTGGATTTTGGGGAATCCTATAAAGATTGAAGGTGCCGAGTACGCTAACACAAGGGCTATTTATATCTGTAATCATGCATCTCCAATCGACATTTTCCTTATGATGTGGTTGACTCCAACGGGCACTGTTGGCATTGCAAAGAAAGAGATTGTATGGTACCCTTTGTTTGGGCAACTTTATGTCTTGGCCAACCATCTCCGCATTGATCGCTCCAACCCAACTGCAGCCATCCAGTCCATGAAGGAGGTGGCTCGTGCAATTGTAAAAAACAAACTGTCCTTGATCCTTTTTCCTGAGGGCACCAGGTCCAAGGATGGACGATTACTCCCTTTTAAAAAGGGTTTTGTCCACTTGGCAATGCAATCGCACCTCCCTATCGTTCCAATTGTCCTGACAGGCACTCATCTTGCATGGAGGAAGGGCAGCTTACATGTTCGACCAGCACCCCTTACTGTAAAGTATCTTCCCCCAATCAAAACCGATGATTGGACTGCAGACAAGATCGATGACCATGTAAAAATGGTACATGACATATACATCAAACACCTCCCACAGCCTCAGAGACCTCTTGTGGTAGAAGAAGAAACTCCCACCAAGGGCTGA 984 45.22 MEKTASGSVMRNRRLESFFNASPIPNMGVSWKIGSKKGVGEKPKTDLYVEDDGWLSILISWIRIVTCFVSMMVTTFVWALIMLVLLPWPYERLRQGNIYGHVTGRMLCYLAEKMMKSRFLGCPLTEMWILGNPIKIEGAEYANTRAIYICNHASPIDIFLMMWLTPTGTVGIAKKEIVWYPLFGQLYVLANHLRIDRSNPTAAIQSMKEVARAIVKNKLSLILFPEGTRSKDGRLLPFKKGFVHLAMQSHLPIVPIVLTGTHLAWRKGSLHVRPAPLTVKYLPPIKTDDWTADKIDDHVKMVHDIYIKHLPQPQRPLVVEEETPTKG* 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6477610 6482034 - Vvi19g506 Vvi19g506 782005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g506 327 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE ALPHA 54 315 - -
Vvi19g506 327 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 71 300 - -
Vvi19g506 327 CDD LPLAT_AGPAT-like 127 296 - -
Vvi19g506 327 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 54 315 - -
Vvi19g506 327 Pfam Acyltransferase 134 258 IPR002123 GO:0016746
Vvi19g506 327 SMART plsc_2 146 261 IPR002123 GO:0016746
Vvi19g506 327 TIGRFAM AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 143 258 IPR004552 GO:0003841|GO:0008654|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g506 K13509 AGPAT1_2; lysophosphatidate acyltransferase [EC:2.3.1.51] - vvi:100245306 623.239
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g506 . . . . Bpe09g00177 . Bma10g00546 Bma13g01055 . Cmo04g01027 . . . . . . . . . . . . . . Cla10g00508 Cam10g0503 Cec10g0520 Cco10g0507 Clacu10g0523 Cmu10g1349 Cre10g0754 . . Cone14ag1141 . . Csa03g00517 . Cme06g02256 Blo07g00907 Blo10g00829 Bda05g00723 Bda12g00906 . Bpe03g00793 . . . . . . . Car04g00894 . . Cpe01g00867 Bhi11g00622 . . . . Mch10g1268 . . . . . . . . Lsi05g00602 . Chy06g01813 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009452 2 2 2 2 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 2 1 33