Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g507 ATGCTTAGTCCTATTTTCCGGGTCAGAGATTACGAGGTTCAAGATTCTTTGCCTTTCTCCATAGGATTCTCATCAGATGAAGTCCCAATTTGCACGATGACAAATAGCATACTGTTTCCAAAAGGCCAACCCATTCCAAGTGCTAAAATTCTGACATTTCAACGAAGTAGTCTGTTCCACTTGGAAGCATTCTATGCCAATCCAAATGAATTGCCTGCTGGCATGCCTTCAAAAATTGGTTGTTTTACGATTGGGCCTTTTCAAGCTTCTCATGGTGCTAAGGTAAAGGTTAAAGTTCATTTAAACGTCCATGGGATTGTCACTGTTGAGTCAGCCTCGTTGATAGAAGATCATGAAGATGATTCAGTTACTAGGGATCATGCACAATTGAACTCGGACAAAATGGAGGCTGAGTCTGTTTCTGGTTCTGGTTCTTCTGTGGCAGTGGAAAATGGTGTTGAGGATGGTACCTCTACTCAGTCAAAATCTTCACAGACCACTTCTGCTGGTGGTGTGAGAAAGCATAAATCAACTAGGAGGCATGAGATACCAGTAAGTGAGAACATATATGGGGGAATGACCGAGGCTGAGCTTTCAGAAGCACAAGAGAAAGAAATTCAGCTGACACAACAGGACAGAACTGTGGAGCAGACCAAAGAGAAGAAGAATGCCCTGGAGTCTTACGTCTATGACATGCGGAATAAGCTTTTCCACACCTATCGGAGCTTTGCAAGCGATCAAGAGAGAGAGGGCATCTCCAGAAGCCTACAGCAGACAGAGGACTGGCTTTACGAGGATGGTGATGATGAAACTGAAAATGCTTATAGCTCTAGACTGGAGGATCTTAAGATGCTGGTGGATCCTATTGAGAATCGATATAAAGATGAAGAGGCAAGGGCACAGGCTACAAGGGATCTGTTGAACTGTATTGTGGAACATCGGATGTCTGTGGGCTCACTCCCACCTAACGACGGAGAGCAAATCCTTAATGAATGCAACAAAGCTGAGCAGTGGCTGAGAGAGAGAACCCAGCAACAAGAGTCATTGTCTAAGAACACTGACCCAGTACTGTGGTCAAGCGATATCAAGAAGATGACTGAGGATTTGGACTTGAAATGCAAAAATATACTGGGTTCCAGGACTTCTCCAAATCCAGAGGACCACAAGGGCACAGGCCCATGA 1182 44.59 MLSPIFRVRDYEVQDSLPFSIGFSSDEVPICTMTNSILFPKGQPIPSAKILTFQRSSLFHLEAFYANPNELPAGMPSKIGCFTIGPFQASHGAKVKVKVHLNVHGIVTVESASLIEDHEDDSVTRDHAQLNSDKMEAESVSGSGSSVAVENGVEDGTSTQSKSSQTTSAGGVRKHKSTRRHEIPVSENIYGGMTEAELSEAQEKEIQLTQQDRTVEQTKEKKNALESYVYDMRNKLFHTYRSFASDQEREGISRSLQQTEDWLYEDGDDETENAYSSRLEDLKMLVDPIENRYKDEEARAQATRDLLNCIVEHRMSVGSLPPNDGEQILNECNKAEQWLRERTQQQESLSKNTDPVLWSSDIKKMTEDLDLKCKNILGSRTSPNPEDHKGTGP* 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6485716 6495683 + Vvi19g507 Vvi19g507 782006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g507 393 MobiDBLite consensus disorder prediction 134 172 - -
Vvi19g507 393 PANTHER HEAT SHOCK 70 KDA PROTEIN 1 390 - -
Vvi19g507 393 Gene3D - 193 304 IPR029048 -
Vvi19g507 393 MobiDBLite consensus disorder prediction 118 133 - -
Vvi19g507 393 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 7 139 IPR029047 -
Vvi19g507 393 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 195 293 IPR029048 -
Vvi19g507 393 Coils Coil 201 221 - -
Vvi19g507 393 Pfam Hsp70 protein 2 293 IPR013126 GO:0005524|GO:0140662
Vvi19g507 393 PANTHER HSC70CB, ISOFORM G-RELATED 1 390 - -
Vvi19g507 393 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 6 226 IPR029047 -
Vvi19g507 393 MobiDBLite consensus disorder prediction 118 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g507 K09489 HSPA4; heat shock 70kDa protein 4 - vvi:100250433 773.467
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g507 Blo03g00559 . Bda07g00360 . . . . . . . Cma01g01133 Cma09g00950 . Car09g00863 . Cpe06g00765 Cpe02g00768 . . . . . . . . . . . . . . . . Cone14ag1142 Cone15ag1160 Lsi04g01203 . . . . . . . Bpe11g00547 . . Bma14g00339 . Cmo01g01184 Cmo09g00948 . . . Car16g00544 . . . . . . . . . Cla05g01487 . Cec05g1613 . Clacu05g1583 Cmu05g1486 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071861 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1