Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g508 ATGGCCGGTTTCGAAGCTCCATCGTTCTCTCTGGGACTCGATCTCGAACTAGATTTCGATTTGGAGCCCCGATCCAATTCTAATGGTACGCAACAACACTCTTTATACAACCATGCTCCTAGAAACCTTACAGTTGAATTCGAAGCGTATGTCTCCGACTCTGATCCGGAGGTCTCGGCGCCGGCTCTCAAGCGTCTCCGGAGAGGGCCCGGGAGGGTCCATAGGAGGGAGCTAGCGGAGGCGTGGTGTAATGTTGATGAGGAAATCGAAGAGTTTTCTTCGCAGGAGGGTTTTAGGAGAGATGAGCATCCATCAACACAATATCATTCAGTGTGTAGCAGTTCAAAGTTCCCATTGCGAGCATCTGGGGTTTTAACCAGTCGGTCAGCAAGTCATAGGAAAGCAGATGCAAATCAAGAGGCTAAGAACACCCATCCATCTGCAAAAGTGAGACAGTCTAACCATAGGCAATATTCATGTGCAAGTGAAGATAAGAGTACAAAAACATTTGTAAGTATGCCTCAGAATGTGGATTTATGGAAAGACTTCTGGCCCAATAGGAGTGTTGGCATTCCCACACCTGCTCTGGATGAGGTCTGTGAAGAATACTTCAGGTCTGTGAAGGACAAGAATGTAACTGTGAAACTGGGCAGTGATGGGTGCATAAGTAATGAGAAGAGGTCTTATCAGAATAAAAATAACAGGAAAACTGTACAGCACCAATTGGACTTAGCAGATCCTCTTCCTCCAGCCCATCGTTACTTTTTCCATGCTGATCCAAGGATTCAGAAACTAGTCCGCAGTCGCTTACCCAACTTTTCTCCACTGGGTGTTGTTAGTAACACAAATATGCAACATGGTGCATCAGTCATTGATTACATGAGTCAATTTAGCCATGGAGAAGCTTCAAAGAAGCAGGTAAATCAGGATGTTAGCATTGGGAGAAGCACAATGCAGGCCAGAAAGAATGCTAGAAAGTTTAATGCTGATGAAGCCTTAAATGCTTCTGGAAGCTGGGTGAACCCCAAAAGCTGTGCTAGTATTCCTAAGAAAGCTGGAAAAGGACAGGTTCATGCAAATGGTCAATCTGCTAGTAGGTGGTATACTTCCCCAGATGGAAGGAAGGTTTATGTCACTAAAAGTGGCCAGGAGTTGACAGGTTCAATGGCCTATAGACATTACAAGAAGGACAATGGAGTCAGATCTAAAAAGTCAAAGGGGAAAACTACAGCTAGAAGGACTTCTAAGAAGAAACAAAAAACCTGA 1266 44.71 MAGFEAPSFSLGLDLELDFDLEPRSNSNGTQQHSLYNHAPRNLTVEFEAYVSDSDPEVSAPALKRLRRGPGRVHRRELAEAWCNVDEEIEEFSSQEGFRRDEHPSTQYHSVCSSSKFPLRASGVLTSRSASHRKADANQEAKNTHPSAKVRQSNHRQYSCASEDKSTKTFVSMPQNVDLWKDFWPNRSVGIPTPALDEVCEEYFRSVKDKNVTVKLGSDGCISNEKRSYQNKNNRKTVQHQLDLADPLPPAHRYFFHADPRIQKLVRSRLPNFSPLGVVSNTNMQHGASVIDYMSQFSHGEASKKQVNQDVSIGRSTMQARKNARKFNADEALNASGSWVNPKSCASIPKKAGKGQVHANGQSASRWYTSPDGRKVYVTKSGQELTGSMAYRHYKKDNGVRSKKSKGKTTARRTSKKKQKT* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6497804 6501971 - Vvi19g508 Vvi19g508 782007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g508 421 MobiDBLite consensus disorder prediction 387 421 - -
Vvi19g508 421 MobiDBLite consensus disorder prediction 397 421 - -
Vvi19g508 421 MobiDBLite consensus disorder prediction 347 369 - -
Vvi19g508 421 MobiDBLite consensus disorder prediction 126 162 - -
Vvi19g508 421 PANTHER RHO GTPASE-ACTIVATING PROTEIN 1 155 - -
Vvi19g508 421 PANTHER RHO GTPASE-ACTIVATING PROTEIN 139 419 - -
Vvi19g508 421 MobiDBLite consensus disorder prediction 141 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g508 - - - vvi:100255618 816.609
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g508 . Blo03g01449 . . . Bpe08g01125 . . . . . Cma09g00951 . Car09g00864 Sed07g2689 Cpe06g00766 . Bhi09g01866 Tan01g4548 Cmetu01g1257 . Hepe01g1279 Mch11g1187 . . . . . . . . . . . . Lsi04g01202 . . . . . . . . . Bma07g01298 . . . Cmo09g00949 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006811 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 5 3 1 37