Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g510 ATGGAAGGAATCGTAGTTAGAAGAGTTATTCCCTCAGACAACAGTTGCCTTTTCAATGCTGTTGGGTATGTCATGGAGCATGACAAAAATAAAGCTGCATATTTGAGACAGGTTATAGCTGCAATAGTGCAAAGCGATGCAACAAAGTATTCTGAAGCATTTCTTGAAAAGCCAAATGAGGAATATTGTGCTTGGATTCTCAACCCTGAGAAATGGGGAGGTGCGATTGAGCTTTCAATATTAGCAGATTATTATGGCCGGGAAATTGCAGCATACGATATCCAAACTGGCCGATGTGATGTGTATGGTCAGGAGGCAGGTTATGATGAAAGGGTTATGCTGATCTATGATGGACTGCACTATGATGCCTTGGCTATGTCTCCATTTGATGGTGCTCCAGAAGAGTTTGATCAGACTGTATTTACAGTACAAACAGACAGGGCCATTGGTCCAATCGAGGAACTTGCCCTTAACCTTGTTAAGGAACAACAAAGGAAAAGGAGATTTACCGACACAACCAACTTCACATTGCGGTGTGGTGTATGCCAAATTGGAGTCATTGGCCAGAAGGAGGCTATGGAGCATGCCCGAGCAACAGGTCATGTCAACTTTCAAGAATACAGATGA 627 43.06 MEGIVVRRVIPSDNSCLFNAVGYVMEHDKNKAAYLRQVIAAIVQSDATKYSEAFLEKPNEEYCAWILNPEKWGGAIELSILADYYGREIAAYDIQTGRCDVYGQEAGYDERVMLIYDGLHYDALAMSPFDGAPEEFDQTVFTVQTDRAIGPIEELALNLVKEQQRKRRFTDTTNFTLRCGVCQIGVIGQKEAMEHARATGHVNFQEYR* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6524668 6542013 - Vvi19g510 Vvi19g510 782009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g510 208 Gene3D - 1 173 - -
Vvi19g510 208 SUPERFAMILY Cysteine proteinases 8 124 IPR038765 -
Vvi19g510 208 Pfam OTU-like cysteine protease 12 116 IPR003323 -
Vvi19g510 208 PANTHER UBIQUITIN THIOESTERASE OTU1 6 206 - -
Vvi19g510 208 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 6 206 IPR039138 GO:0004843|GO:0016579|GO:0030433|GO:0101005
Vvi19g510 208 ProSiteProfiles OTU domain profile. 5 127 IPR003323 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g510 K13719 - vvi:100260612 426.402