Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g512 ATGATCTCATTTTTTATTAATATTTCATTATATATTTTTAATGGTGGAAATTCAAAGTACATAAGTATTGCTATCAAAAGTTTAGTAGAGCAGTACCCATATGCAATTTTTTTTATAATCTATAAAATAAAAAGCCATACAATGTGTAGAGAGGCTGTTTCGTTCCGGGTCTTCTCCCAAACGAGGGATTCTGGAAATGGGTTGGTGTTCAGAGTGATGAAGAGCGCTGTCCTCGCTGCCTTCACCTGCATTTTTGCCCTAGGAGGAGCAGTCGTGGGTACAATCACAGGAGCCATTAAAGGCCAAACCACAGAAACCGGCTTCTTTCGTGGGTCCGGAATAGGTGCGGTGACAGGGGCCATAACAGCCCTTCAGCTGCTTGAATCAGTCGCTGCTGGCGAGTCATTGTCTAAGGCAGCTTTGTTATGTAGCCTAGTGAATGGGAAGGTGTTCATGGAATGGGTGAGTCCTGCAGTGCTAAAAGCTTATCAATGGCAAATTAGCACATTGGAAACAAATTATGGAGAGACTGAGGACTTTTACAACATCAGTGGAGCCAAAGGGCTGCCTCATAATTTCATTGAAAAGCTTCCCAAATCAAACTTTTGCCATAGCAATGCAGAAATGTATAATGAAATCAGTTGTACCATTTGCTTGCAGGATTTCAAGGATGGAGAGATGACAAGAGGGCTTCCAAGTTGCAGGCACTACTTTCATATGGAATGTGTAGATCAATGGCTAACCCTACATGGGTCTTGCCCCATGTGTAGAAAAGATGTTTGTATGGACACTTGA 795 42.14 MISFFINISLYIFNGGNSKYISIAIKSLVEQYPYAIFFIIYKIKSHTMCREAVSFRVFSQTRDSGNGLVFRVMKSAVLAAFTCIFALGGAVVGTITGAIKGQTTETGFFRGSGIGAVTGAITALQLLESVAAGESLSKAALLCSLVNGKVFMEWVSPAVLKAYQWQISTLETNYGETEDFYNISGAKGLPHNFIEKLPKSNFCHSNAEMYNEISCTICLQDFKDGEMTRGLPSCRHYFHMECVDQWLTLHGSCPMCRKDVCMDT* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6551524 6553699 - Vvi19g512 Vvi19g512 782011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g512 264 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 43 260 - -
Vvi19g512 264 SMART ring_2 215 256 IPR001841 -
Vvi19g512 264 SUPERFAMILY RING/U-box 205 263 - -
Vvi19g512 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 262 IPR013083 -
Vvi19g512 264 Pfam Ring finger domain 214 257 IPR001841 -
Vvi19g512 264 ProSiteProfiles Zinc finger RING-type profile. 215 257 IPR001841 -
Vvi19g512 264 CDD RING-H2_PA-TM-RING 215 257 - -
Vvi19g512 264 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 43 260 IPR044523 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g512 - - - vvi:100265899 446.432
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g512 . Blo03g01452 Bda07g00364 . . Bpe08g01122 . . . . . Cma09g00954 . Car09g00868 . . . Bhi09g01646 . . . Hepe01g1274 . . . . . . . . . . . . . . Csa07g01092 . . . . . . . . Bma07g01295 Bma14g00336 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014791 1 0 1 2 1 0 1 0 0 0 0 0 1 1 1 0 0 2 1 0 1 0 1 0 0 0 0 2 0 1 17