Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g514 ATGGTTGAACTTGATCTCCAGATTCCATCTGCTTTTGATCCATTTGCTGAGGCCAAGGACTCAGGCGCGCCTGGGGCAAAAGAGTATGTACACATTCGTATACAGCAGAGGAATGGAAAGAAGAGCCTGACTACTGTCCAAGGACTGAAGAAGGATTACAGTTACGAGAAGATCCTCAAGGATCTCAAGAAGGAGTTCTGCTGCAATGGGAATGTTGTGCAGGACAAAGAGCTTGGCAAGGTTATTCAACTGCAAGGTGATCAGCGAAAGAACGTGTCCAATTTTCTCGTCCAGGCTGGGCTTGTGAAGAAGGAGCAGATCAAGATACATGGTTTTTGA 339 46.31 MVELDLQIPSAFDPFAEAKDSGAPGAKEYVHIRIQQRNGKKSLTTVQGLKKDYSYEKILKDLKKEFCCNGNVVQDKELGKVIQLQGDQRKNVSNFLVQAGLVKKEQIKIHGF* 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6579959 6581211 - Vvi19g514 Vvi19g514 782013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g514 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743
Vvi19g514 112 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 6 112 IPR005874 GO:0003743
Vvi19g514 112 SUPERFAMILY eIF1-like 4 112 IPR036877 GO:0003743|GO:0006413
Vvi19g514 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743
Vvi19g514 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743|GO:0006413
Vvi19g514 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 112 - -
Vvi19g514 112 PANTHER PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG 1 112 - -
Vvi19g514 112 Gene3D - 2 112 - -
Vvi19g514 112 Pfam Translation initiation factor SUI1 27 100 IPR001950 GO:0003743|GO:0006413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g514 K03113 - vvi:100243506 226.098