Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g516 ATGGCGAAGGGACTGCAGCAGCAGGCCGGAGGGCAAAATCTTCCGGCGGACGTGACGGCGCTGATTGATCAACTGGAGCGGCACTGCTTGGCTCCTGATGGGTCTCTCGTCTCCAAATCTGCCTACTACGATCTCCAATTGGCAAGAGAGGAGATGGCAAGAGAGAGGCTTCGCTATTTTGAAGCCATGGCAATCTACTGCGAAGCAATTGCAATGGTGGAAGAGTATCAACAGGCTGTGTCAGTGGCAAATCTTGGAGGAATTCGGGATGTTCAGGGACTATATCCACAACTAGGCTTGAAGAATTCTCCTCAGGTTTATGAAACTCTAGAGCATCGACTGGTTGTTGCAGAAGCAGCTCAAAGATTGAGGCTTCCTCTTATTTCCAAAGATGGTGAAATTCATGAGGAAGAAATTGAGAAATGGAGTATAATGTCACGAAGCTCTCTTGATAGTACAAGTACCAGCATCACAATCAGTTCAAGCTCAAATTCCACTAACTATACAAATAGTTCTGTTAATATCACAGCAGAAAGGGCAAGTAATGCACTTTCTCTTGGTACTGATACATCAGAACCTGAAGTTGGTGGTGTTCCCAACCGCTTTCTAGGAATAACACCTGCTTATTTATGGCAAACTCAGCTCCAACAAACACCCTTATCAATGGATATGACAGACTACCAGATGTCACTTTCTCGTGAGATTGAGTCACGTTTAAAAGCTAAATGTGACAAGTTGGCTGACGTTTTTGTAATGGATGACATTGATTCTTCATCACGTACTCAAAACTCAAGTGCTCGGCTTCCAGAAAGGGTGAAGTTAATCATTGAGGAGATTGAAAGGGAAGAAGCTGCTTTGCGGGAGGACCTCTATTCTGCTGATAGAAAGTTTGCAGAATACTACAATGTCTTAGAGCAGATACTTGGAGTGCTTATTAAGCTTGTCAAAGATTTGAAATTGCAACATCAACATAAATATGATGAACTACAAAAAACTTGGCTATGTAAAAGGTGTGAGACCATGAGTGCAAAATTGAGGGTTTTGGAGCATATTCTCCTCCTTGAAACTTACACTCAGGATTCGATACCGGCACTCCATAAAATAAGGAAGTATCTTCTTGAGGCTACAGAAGAAGCTTCAATTGCATACAATAAAGCAGTGACACGCCTTAGAGAGTACCAAGGTGTTGATCCTCACTTTGATACAATTGCAAGGCAGTATCACGAAATTGTAAAGAAATTGGAGAACATGCAATGGACGATACACCAAGTCGAAATGGACCTCAAACGTCTACCTGATCATCCCAGCACATAA 1314 42.69 MAKGLQQQAGGQNLPADVTALIDQLERHCLAPDGSLVSKSAYYDLQLAREEMARERLRYFEAMAIYCEAIAMVEEYQQAVSVANLGGIRDVQGLYPQLGLKNSPQVYETLEHRLVVAEAAQRLRLPLISKDGEIHEEEIEKWSIMSRSSLDSTSTSITISSSSNSTNYTNSSVNITAERASNALSLGTDTSEPEVGGVPNRFLGITPAYLWQTQLQQTPLSMDMTDYQMSLSREIESRLKAKCDKLADVFVMDDIDSSSRTQNSSARLPERVKLIIEEIEREEAALREDLYSADRKFAEYYNVLEQILGVLIKLVKDLKLQHQHKYDELQKTWLCKRCETMSAKLRVLEHILLLETYTQDSIPALHKIRKYLLEATEEASIAYNKAVTRLREYQGVDPHFDTIARQYHEIVKKLENMQWTIHQVEMDLKRLPDHPST* 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6587060 6593530 - Vvi19g516 Vvi19g516 782015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g516 437 PANTHER BNAA06G02620D PROTEIN 2 429 - -
Vvi19g516 437 Coils Coil 276 296 - -
Vvi19g516 437 Pfam HAUS augmin-like complex subunit 4 191 426 IPR029327 GO:0051225|GO:0070652
Vvi19g516 437 PANTHER AUGMIN SUBUNIT 4 FAMILY MEMBER 2 429 IPR029327 GO:0051225|GO:0070652
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g516 K16587 HAUS4, AUG4; HAUS augmin-like complex subunit 4 - vvi:100253742 795.808
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g516 Blo03g00555 . Bda07g00366 . . . . . . . Cma01g01128 . . . . . Cpe02g00774 Bhi09g01649 . . . . Mch11g1192 . . . . . . . . . . . . Lsi02g01902 Csa07g01095 . . . . . . . . . Bma14g00334 . Cmo01g01179 . . . . Car16g00539 . . . . . . . . . Cla09g01011 Cam09g1068 Cec09g1068 Cco09g1086 . . Cre09g1032 . . . Cme01g01032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006976 1 2 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 2 1 2 1 1 36