Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g517 ATGGAAAAGGGCAACGAGAAGAGCCTAACGACGTCGTTTCAGAAACTCCATCTCAGTCCCATTTCCAAATCCAAGCCTTCCGTCATCCCTCCGACTTTTCAATCCTCCAGATCACCTATTGAGAAGACAAAGCCTCCAAGTTTGGAAAGTCTGTGCCTCGGAGTTGTAGGGAAGCATTTTGAGGATATCATTGGGGACTTGGGTGAGATTGCGGTGAACTTTCCAGCAGATACTAAGATGGCAATGGCAGCAATTGCTAGGAGAAGACAGTTACTTAATGATGATGTCATCATCTCATTGGCCGAAAGTTCATGGGAAATCCTTGATATCTCTGGTTCAGATGTTTCTGATTTTGGTTTGGCAAAGGTGGCAGAGAGATGCAAAGTTCTCCGAGCTGTAGATATAAGCCGATGCAGCAAAGTCACTGCAGCTGGTGTTTCCGAGCTTGTGTGGCATTGTCATTCCTTAGAGACATTGAGATGCGGAGGGTGCCCGAGAAGTGACCATACCGCACGCCAATGCTTGGGTATCTTCAAACCAAAGCTGAATGATATCGAGGGAGAGTCCTGGGAGGAACTTGATCCCACAGAGATTGCTCATGGTGCAGAGTCATTGCGCTGGCTCGTGTGGCCAAAAATTGATAACAATTCATTGGAGAGCTTTGCTGCCGAATGCCCACGCATCATAGTAAACCCAAAGCCATCGCCTTTTGGTTTCAGAGGGGTCAAGGTTCCAGTGGAAGCACTGCCAAACGTAGCACTGGATGAGCCCATTGTTAAGGATATTGATCCCCGAACATGGGCGGTTAGTGGGTTTACAGCAAGACCAACAGCTCCGTCAAGTCCCAGCTCCACAGAGTTGCCCATTGCTGAAAAATTTAGACTTGCGTTTGTGGAGAGAGACAGCCGATTAGCACCAAAGCGAGCAAAGAATGCAAGGCAACACTTGCGGAGGGCAGAGAGGGAGTGGGTGATGACAAGCACAAGGGCAAAGGCATTAGCTCTGGCCTCACAAGCCAGCAAGTCTCTACATGGTCGGAATTAG 1044 48.66 MEKGNEKSLTTSFQKLHLSPISKSKPSVIPPTFQSSRSPIEKTKPPSLESLCLGVVGKHFEDIIGDLGEIAVNFPADTKMAMAAIARRRQLLNDDVIISLAESSWEILDISGSDVSDFGLAKVAERCKVLRAVDISRCSKVTAAGVSELVWHCHSLETLRCGGCPRSDHTARQCLGIFKPKLNDIEGESWEELDPTEIAHGAESLRWLVWPKIDNNSLESFAAECPRIIVNPKPSPFGFRGVKVPVEALPNVALDEPIVKDIDPRTWAVSGFTARPTAPSSPSSTELPIAEKFRLAFVERDSRLAPKRAKNARQHLRRAEREWVMTSTRAKALALASQASKSLHGRN* 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6593737 6601198 + Vvi19g517 Vvi19g517 782016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g517 347 PANTHER UNCHARACTERIZED 6 346 - -
Vvi19g517 347 MobiDBLite consensus disorder prediction 22 43 - -
Vvi19g517 347 MobiDBLite consensus disorder prediction 22 44 - -
Vvi19g517 347 Gene3D Ribonuclease Inhibitor 42 192 IPR032675 -
Vvi19g517 347 PANTHER OS06G0679700 PROTEIN 6 346 - -
Vvi19g517 347 SUPERFAMILY RNI-like 103 185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g517 - - - vvi:100248711 670.618
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g517 . Blo03g01453 . . . Bpe08g01120 . . . . Cma01g01127 . . . Sed04g3213 . Cpe02g00775 Bhi09g01650 Tan01g4558 Cmetu01g1354 . Hepe01g1269 Mch11g1193 . . . . . . . . . . . . Lsi02g01901 Csa07g01096 . . . . . . . . Bma07g01293 . . Cmo01g01178 . . . . . . . . . . . . . . Cla09g01012 Cam09g1069 Cec09g1069 Cco09g1087 . . Cre09g1033 . . . Cme01g01030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012078 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 30