Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g518 ATGTATATGGCCACTTCTCCATATTCTTCACTCGCGCTCCTCAGAGCCTCTAGGGTTCGCTTCGCGCCTTCTATCTCTAGAGTTTCGCTGTCTTCTTCTTCTTCTTCTTCTTCTCCTCATCCTCCTTGTCCCTCTAGAATCCCCGCTTCTGCTTCTTCTTCGTCTTTGCCTTTTTCCACGATCAGTGGTGGTTACCGTTCCTTGGGATTCTTGTCGGCGTTTCGATCTCGTCGTTGGAGCCACGGCGTCGACTGGCGGTCCCCGGTCAGCCTCCGCGCTCAGATCAGGGCCGCTGCTCCTGTGATCGAGCGGTTCGAGCGGAAAATGGCTACTATAGCTTCTGAGCATCCTTTTAAGGGAATATTGACCAGTGTTCCCAAGCCTGGAGGTGGAGAGTTTGGAAAGTTCTACAGCCTCCCTGCTCTGAATGATCCAAGGATTGACAAGCTGCCTTACTCTATAAGGATACTTCTGGAATCTGCCATACGTAATTGTGACAACTTCCAAGTAACCAAGGATGATGTTGAAAAGATTATTGATTGGGAGAATACTTCACCGAAGCAAGTTGAAATTCCCTTCAAGCCTGCTCGTGTTCTCTTACAGGACTTTACTGGAGTGCCAGCTGTGGTTGACCTTGCCTGCATGCGGGATGCCATGAACAACCTTGGCAGTGATTCAAACAAGATCAATCCCTTGGTGCCAGTGGACCTTGTCATTGATCATTCAGTTCAGGTTGATGTAACAAGATCAGAAAATGCAGTACAGGCAAATATGGACCTTGAATTCCAGAGGAACAAAGAGAGGTTTTCCTTCTTGAAATGGGGTTCAACCGCCTTCCGTAACATGCTTGTTGTTCCTCCTGGTTCTGGTATTGTCCACCAGGTTAATCTGGAATACCTTGGACGGGTTGTTTTTAACAATGATGGTATTCTCTATCCTGATAGTGTGGTTGGTACTGATTCCCACACAACTATGATTGATGGACTAGGAGTTGCTGGATGGGGTGTTGGAGGAATTGAAGCAGAGGCTGCAATGCTTGGCCAGCCAATGAGCATGGTATTACCTGGTGTTGTTGGATTTAAGCTGTCTGGTAAGTTGTGTAGTGGTGTCACAGCAACTGACTTGGTTTTGACCGTGACACAAATGTTAAGGAAGCATGGTGTTGTTGGCAAGTTCGTTGAGTTCTATGGTGAGGGCATGGGTGAATTGTCATTGGCTGATAGGGCCACCATTGCAAACATGTCTCCTGAATATGGAGCAACAATGGGTTTCTTCCCTGTAGATCATGTTACATTACAGTATCTTAAATTAACTGGAAGAAGCGATGAAACGGTAGCTATGATAGAAGCATATTTGCGTGCAAACAGAATGTTTGTTGATTACAATGAGCCTCAAGTAGAACGATTTTACTCATCTTATCTGCAATTGAACCTAGAAGATGTTGAACCCTGCATGTCAGGACCTAAGCGGCCTCATGATCGAGTTCCTTTGAAAGAGATGAAGACTGACTGGAAAGCATGTCTTGATAACAAAGTTGGATTCAAGGGCTTTGCTGTACCGAAAGAGGCACAGGACAAAGTGGCCAAGTTTTCATTCCATGGACAGCCTGCTGAGCTCAAGCATGGTAGTGTTGTTATAGCAGCTATCACGAGTTGTACAAACACATCAAATCCTAGTGTCATGCTTGGGGCTGGTCTTGTTGCAAAAAAGGCCAGTGAACTTGGCTTGGAGGTCAAGCCATGGATTAAAACTAGTCTTGCTCCAGGTTCTGGAGTTGTTACAAAATATCTGCTCCAGAGTGGCCTGCAGAAGTACTTGAATCAGCAGGGATTTCATATTGTTGGCTATGGATGCACAACATGTATTGGGAATTCAGGGGATCTTGACGAATCAGTAGCTTCTGCAATTTCAGAAAATGATATTATTGCAGCTGCCGTGCTCTCTGGTAACCGGAACTTTGAAGGTCGTGTTCATGCATTGACAAGAGCCAACTATCTAGCATCACCTCCACTAGTTGTTGCTTATGCACTTGCCGGCACAGTTGACATCGACTTTGAGAAGGAGCCAATTGGTACAGGAAAGGATGGTAAAGATGTGTACTTCAAGGACATATGGCCTACTAGTGAAGAAATTGCAGAGGTTGTTCAATCAAGTGTGTTGCCTGAAATGTTCAAGAGTACCTATGAGGCTATCACAAAGGGAAATCCCATATGGAATCAGTTATCAGTTCACAGTTCCTCTCTTTATTCATGGGATCCGAACTCAACCTACATTCATGAGCCCCCATATTTCAAGAACATGACCATGAATCCACCGGGTCCTCATGGGGTGAAGGATGCCTACTGCTTGCTCAACTTTGGCGACAGTATTACCACTGACCATATTTCTCCTGCAGGTAGCATCCATAAGGATAGCCCTGCTGCAAAGTATCTTATTGAGCGTGGGGTGGCTCCCAAGGACTTCAATTCTTACGGTAGCCGTCGTGGAAATGATGAGGTGATGGCAAGGGGCACCTTTGCCAATATTCGCATTGTCAACAAGCTTCTGAATGGAGAAGTGGGTCCAAAGACAATTCACATTCCAACAGGAGAGAAGCTTTATGTGTTTGATGCAGCAATGAGATACAAGGCTGATGGGCATGACACCATTGTCCTAGCTGGAGCAGAGTATGGAAGTGGCAGCTCTCGAGATTGGGCTGCCAAGGGCCCAATGCTACAGGGAGTCAAAGCAGTGATCGCTAAGAGCTTTGAGAGGATCCATCGCAGTAACCTGGTTGGGATGGGAATCATTCCTCTTTGTTTCAAGGCCGGTGAGGATGCTGACACACTAGGCTTGACAGGTCATGAACGCTACAACATCGACCTTCCTAGTAAGATCAGTGAGATAAGGCCAGGCCAAGATGTCACCGTTACAACTGACAATGGCAAGTCTTTCACATGCACGGTCCGCTTTGACACAGAGGTTGAGTTGGAATATTTTAATCATGGTGGCATTCTTCCTTATGCCATCCGGAACCTGATCAACCAATGA 3030 46.17 MYMATSPYSSLALLRASRVRFAPSISRVSLSSSSSSSSPHPPCPSRIPASASSSSLPFSTISGGYRSLGFLSAFRSRRWSHGVDWRSPVSLRAQIRAAAPVIERFERKMATIASEHPFKGILTSVPKPGGGEFGKFYSLPALNDPRIDKLPYSIRILLESAIRNCDNFQVTKDDVEKIIDWENTSPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVQANMDLEFQRNKERFSFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLCSGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRANRMFVDYNEPQVERFYSSYLQLNLEDVEPCMSGPKRPHDRVPLKEMKTDWKACLDNKVGFKGFAVPKEAQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKASELGLEVKPWIKTSLAPGSGVVTKYLLQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVASAISENDIIAAAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKDVYFKDIWPTSEEIAEVVQSSVLPEMFKSTYEAITKGNPIWNQLSVHSSSLYSWDPNSTYIHEPPYFKNMTMNPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLIERGVAPKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTIHIPTGEKLYVFDAAMRYKADGHDTIVLAGAEYGSGSSRDWAAKGPMLQGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLGLTGHERYNIDLPSKISEIRPGQDVTVTTDNGKSFTCTVRFDTEVELEYFNHGGILPYAIRNLINQ* 1010
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6601790 6614339 - Vvi19g518 Vvi19g518 782017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g518 1009 CDD AcnA_IRP_Swivel 785 955 IPR044137 -
Vvi19g518 1009 Gene3D - 708 769 - -
Vvi19g518 1009 CDD AcnA_IRP 197 681 - -
Vvi19g518 1009 Pfam Aconitase C-terminal domain 808 936 IPR000573 -
Vvi19g518 1009 PRINTS Aconitase family signature 311 324 IPR001030 -
Vvi19g518 1009 PRINTS Aconitase family signature 610 623 IPR001030 -
Vvi19g518 1009 PRINTS Aconitase family signature 387 400 IPR001030 -
Vvi19g518 1009 PRINTS Aconitase family signature 282 290 IPR001030 -
Vvi19g518 1009 PRINTS Aconitase family signature 401 414 IPR001030 -
Vvi19g518 1009 PRINTS Aconitase family signature 325 340 IPR001030 -
Vvi19g518 1009 PRINTS Aconitase family signature 258 271 IPR001030 -
Vvi19g518 1009 PRINTS Aconitase family signature 483 497 IPR001030 -
Vvi19g518 1009 PRINTS Aconitase family signature 548 559 IPR001030 -
Vvi19g518 1009 SUPERFAMILY Aconitase iron-sulfur domain 130 743 IPR036008 -
Vvi19g518 1009 MobiDBLite consensus disorder prediction 30 55 - -
Vvi19g518 1009 PANTHER ACONITATE HYDRATASE 80 1009 - -
Vvi19g518 1009 Gene3D Aconitase, domain 3 484 707 IPR015931 -
Vvi19g518 1009 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 80 1009 IPR006249 -
Vvi19g518 1009 Pfam Aconitase family (aconitate hydratase) 176 679 IPR001030 -
Vvi19g518 1009 Gene3D Aconitase, domain 4 772 1008 IPR015928 -
Vvi19g518 1009 ProSitePatterns Aconitase family signature 2. 610 623 IPR018136 -
Vvi19g518 1009 ProSitePatterns Aconitase family signature 1. 544 560 IPR018136 -
Vvi19g518 1009 Gene3D Aconitase, domain 3 115 483 IPR015931 -
Vvi19g518 1009 SUPERFAMILY LeuD/IlvD-like 748 1006 - -
Vvi19g518 1009 TIGRFAM aconitase_1: aconitate hydratase 1 134 1007 IPR006249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g518 K01681 ACO, acnA; aconitate hydratase [EC:4.2.1.3] - vvi:100253811 1958.73
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g518 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000865 4 2 3 3 3 3 4 3 3 2 3 3 4 2 3 2 3 4 4 3 2 2 2 3 3 3 3 4 3 2 88