Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g52 ATGGTGAAACTTATTGATGATCCTCAAACTGTTGTAAATAATCGGAACAAGGTTTTGATTTTGATCGAAGCCTGGGGTGAGTCTGCAAACGAGCTTCGCTATTTGCCTGTTTATGAGGAAACATACAAGAGTCTTAAATCTAGGGGTATCAGGTTCCCTGGTCGTGATAATGAGAGTTTGGCCCCTATATTTACCCCTCCACGCTCGGTTTCGGCTTCAGAATCAAATGCCAATCTTGCCCAAGAAGTTCATCATGATATTCCTGTTCATCGCTTTTCACCAGAACAAACCAAGGAAACATTTGATGTGGCGCGAAATAGCATTGAACTTCTGACTACGGTTTTATCATCTTCTCCGCAACAAGATGCTTTAAAGGATGACTTAACTACCACCCTTGTACAACAGTGTCATCAATCCCAATTCACTGTCCAGAGAATCATTGAGACAGCTGGAGATGATGAGGCACTGCTCTTTGAAGCCTTGAATGTGAATGATGAGATCCAGAAAGTTCTCTCCAAGTATGAGGAGTTGATGAAGCCTTCCGAAGTTCCTCATGAGCCAGAACCCGCTATGATACCTGTTGCTGTTGAGCCTGAAGAATCACCTCGCTATGCAAAAGAAGATTCCCTCATTAGAAAACCAGCCGGTTCTCGAGGGGGGAACCCATGA 669 43.95 MVKLIDDPQTVVNNRNKVLILIEAWGESANELRYLPVYEETYKSLKSRGIRFPGRDNESLAPIFTPPRSVSASESNANLAQEVHHDIPVHRFSPEQTKETFDVARNSIELLTTVLSSSPQQDALKDDLTTTLVQQCHQSQFTVQRIIETAGDDEALLFEALNVNDEIQKVLSKYEELMKPSEVPHEPEPAMIPVAVEPEESPRYAKEDSLIRKPAGSRGGNP* 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 559936 564311 + Vvi19g52 Vvi19g52 781551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g52 222 PANTHER TOM1-LIKE PROTEIN 1 1 220 - -
Vvi19g52 222 Pfam GAT domain 105 179 IPR004152 GO:0035091|GO:0043130
Vvi19g52 222 ProSiteProfiles GAT domain profile. 92 179 IPR004152 GO:0035091|GO:0043130
Vvi19g52 222 SUPERFAMILY GAT-like domain 50 180 - -
Vvi19g52 222 CDD GAT_GGA_like_plant 100 177 - -
Vvi19g52 222 SUPERFAMILY ENTH/VHS domain 1 53 IPR008942 -
Vvi19g52 222 MobiDBLite consensus disorder prediction 196 222 - -
Vvi19g52 222 PANTHER TOM1-LIKE PROTEIN 1 1 220 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vvi19g52 222 Gene3D - 1 61 IPR008942 -
Vvi19g52 222 Gene3D - 89 180 IPR038425 -
Vvi19g52 222 ProSiteProfiles VHS domain profile. 1 53 IPR002014 GO:0035091|GO:0043130
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g52 - - - vvi:100264036 436.802
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g52 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005456 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 3 2 2 40