Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g525 ATGGCCAGAAGCTCCTTCAAATTGGAACACCCCCTCGAAAGGAGGCAAGCAGAAGCTGCTCGCATCAGGGAGAAGTATCCTGATAGAATACCAGTTATTGTGGAGAAGGCTGAAAGAAGTGACATACCTGACATTGACAAGAAGAAATATCTGGTTCCTGCTGATCTGACTGTTGGGCAGTTTGTTTATGTGATCCGGAAGAGGATCAAGCTTAGTGCTGAGAAGGCTATTTTCATTTTTGTCAAGAATGTTCTACCACCCACTGCTGCCATGATGTCTGCCATCTATGAGGAAAACAAAGATGAGGATGGTTTCCTGTATATGACTTACAGTGGGGAAAACACATTTGGATCATTCTAA 360 43.61 MARSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVKNVLPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGSF* 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6681566 6685068 + Vvi19g525 Vvi19g525 782024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g525 119 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 117 IPR004241 -
Vvi19g525 119 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Vvi19g525 119 SUPERFAMILY Ubiquitin-like 4 117 IPR029071 -
Vvi19g525 119 Gene3D - 1 117 - -
Vvi19g525 119 PANTHER AUTOPHAGY-RELATED PROTEIN 1 117 - -
Vvi19g525 119 CDD Ubl_ATG8 12 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g525 K08341 GABARAP, ATG8, LC3; GABA(A) receptor-associated protein - vvi:100246909 229.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g83 Vvi19g525 ECH
Vvi12g377 Vvi19g525 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g525 . . . . Bpe09g00171 . Bma10g00551 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1167 . . . . Blo07g00902 . Bda05g00718 Bda12g00912 . Bpe03g00790 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000267 6 8 5 7 6 4 7 4 4 5 4 4 5 5 5 6 4 9 4 3 5 4 4 3 2 2 4 9 8 5 151