Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g528 ATGGTTCAGATCGTGAAGAGGAAGAAGAAGGGCCGGCCATCGAAGTCAGATCTCGCTCGCCGGAGCACCGCCGAGGGGGCGCAGCCCGAGCGTGACCTCCGCCGGAGCCACCGGCGCAGAAGTGTCAGATACAATATTGACTACGACGATTTCGTCGACGACGATGACGAGGACGAGGAGGATGAACGGCGGAGAGAGAAGAAGCTGAAGCTGGTGCTGAAGCTTCCACACAGTGAGAGCGCTGGCGAGTCGGCGCCGAGTGGAACCCGGAGGGACGAGAACGAGTCGGGCGTGTCCGCGTCGTCATCGGAGTACGGGAATAAGCCGCTGAAAAAGCGCAGAATCGACGGCGAAGACGATGATGACGACGGCGACGGCGATCACGATGATGATGATGATGATGAGGAAAGAGGACGAAAGGCGGATTCAAAAGGGATGGACTCTGTTCTAGGTACGCCAGCAGAGGTTTCATCTGGGATTCCATTGCCTGATAAGAAGTCACTGGAGTTGATTCTTGACAAACTTCAGAAGAAAGATATATATGGTGTTTATGCAGAACCAGTGGATCCTGAAGAGCTGCCTGATTATCATGATGTGATTGAGCATCCAATGGACTTCGCGACAGTGAGGAAGAAACTTGGGAATGGGTCATATCGTACCTTTGAGGAATTTGAGAGTGACGTTTTTCTGATTTGCACCAATGCAATGCAATACAATGCCCCAGATACCATATACCATAAACAGGCACGCGCCATTCAAGAGCTGGCAAGAAAGAAATTCCAGAAGTTAAGAATTGACATTGGACGCTCTGAGAAAGAGCTCAAGTCAGAACGCTCCGAGAAAGAGCTCAAAACGATCTGA 861 51.45 MVQIVKRKKKGRPSKSDLARRSTAEGAQPERDLRRSHRRRSVRYNIDYDDFVDDDDEDEEDERRREKKLKLVLKLPHSESAGESAPSGTRRDENESGVSASSSEYGNKPLKKRRIDGEDDDDDGDGDHDDDDDDEERGRKADSKGMDSVLGTPAEVSSGIPLPDKKSLELILDKLQKKDIYGVYAEPVDPEELPDYHDVIEHPMDFATVRKKLGNGSYRTFEEFESDVFLICTNAMQYNAPDTIYHKQARAIQELARKKFQKLRIDIGRSEKELKSERSEKELKTI* 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6702166 6706645 - Vvi19g528 Vvi19g528 782027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g528 286 ProSitePatterns Bromodomain signature. 182 238 IPR018359 -
Vvi19g528 286 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 281 - -
Vvi19g528 286 SMART bromo_6 157 265 IPR001487 GO:0005515
Vvi19g528 286 Pfam Bromodomain 170 250 IPR001487 GO:0005515
Vvi19g528 286 Gene3D - 127 284 IPR036427 GO:0005515
Vvi19g528 286 ProSiteProfiles Bromodomain profile. 176 246 IPR001487 GO:0005515
Vvi19g528 286 MobiDBLite consensus disorder prediction 1 15 - -
Vvi19g528 286 MobiDBLite consensus disorder prediction 16 35 - -
Vvi19g528 286 PRINTS Bromodomain signature 179 192 IPR001487 GO:0005515
Vvi19g528 286 PRINTS Bromodomain signature 193 209 IPR001487 GO:0005515
Vvi19g528 286 PRINTS Bromodomain signature 209 227 IPR001487 GO:0005515
Vvi19g528 286 PRINTS Bromodomain signature 227 246 IPR001487 GO:0005515
Vvi19g528 286 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 281 - -
Vvi19g528 286 MobiDBLite consensus disorder prediction 1 160 - -
Vvi19g528 286 MobiDBLite consensus disorder prediction 82 106 - -
Vvi19g528 286 SUPERFAMILY Bromodomain 152 263 IPR036427 GO:0005515
Vvi19g528 286 CDD Bromodomain 164 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g528 K22184 BRD9; bromodomain-containing protein 9 - vvi:100267501 458.373
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g528 . . . . . . Bma10g00553 Bma13g01065 . . . Cma09g00958 Car01g00997 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g01022
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019937 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 4