Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g530 ATGGCCTCAACTCCTGAACCACTTTGCCAGATGATGCTTCGTGTGGCTGATCTAGATCTCTCTATCAAGTTCTGCGAACAGGCATTGGGCATGAAGCTTCTGCTGAAGTATGACAACCCTCGAGAGAATTATACTATGGCCATGGTGGGCTATGGAGAAATGAACGAAACAATTGTTTTGGAGCTGATATATACCTATAATGTAACTGAGTATACCAAAGGAAACGGATTCATTGAGGTTGCTGTAAGTACAGATGATGTATACAAGAGTGCTGCAGCTGTTTTGCTAGTAAGCAAAGAACTGGGAGGAAAGATCATACAACCACCTGGTCCAATTCCTGTAATCAACGCCAAAATGACTTCTTTTGTCGACCCAGATGACTGGAAAATTGTATTGATAGACAATGAAGATTTCCTCAAGCAGCTGCAGAAGAAAGAGTGA 441 42.18 MASTPEPLCQMMLRVADLDLSIKFCEQALGMKLLLKYDNPRENYTMAMVGYGEMNETIVLELIYTYNVTEYTKGNGFIEVAVSTDDVYKSAAAVLLVSKELGGKIIQPPGPIPVINAKMTSFVDPDDWKIVLIDNEDFLKQLQKKE* 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6719842 6720919 - Vvi19g530 Vvi19g530 782029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g530 146 PANTHER LACTOYLGLUTATHIONE LYASE 3 145 - -
Vvi19g530 146 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 8 135 IPR029068 -
Vvi19g530 146 Gene3D - 4 143 IPR029068 -
Vvi19g530 146 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 7 135 IPR037523 -
Vvi19g530 146 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 93 - -
Vvi19g530 146 PANTHER LACTOYLGLUTATHIONE LYASE 3 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g530 K01759 GLO1, gloA; lactoylglutathione lyase [EC:4.4.1.5] - qsu:112014191 201.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g80 Vvi19g530 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g530 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00494 Cam10g0486 Cec10g0504 Cco10g0489 Clacu10g0505 Cmu10g1332 Cre10g0735 . . . . . Csa03g00500 . Cme06g02233 . . . . . . . . Sed04g0721 . . . Cma16g00898 . Car16g00874 . . Bhi11g00600 Tan01g1721 Cmetu06g0380 . Hepe07g1266 . . . . . . . . . . . Chy06g01826 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071864 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1