Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g533 ATGGCATGCATTCTGCACGGTCATCGGGTTGGAATTTCTTATTATGATTCCAGTATTCGCCAACTGCATGTCCTGGAAGTTTGGGAAGATGGCAGTTCAGATTTTCCTTTGATTGATTTGGTAAAGTATCAAGCAAAGCCCCTAATCATTTACACGAGCACTAAATGTGAGGACTCCTTCTTGTCTGCATTACAACGAAGTGATGGAACAACTGAGGCCCCTACAGTGAAGCTTATGAAAAGTTCAATATTCAGCTATGAGCAAGCATGGCACAGACTGATTTACCTTAGAGTAACTGGGATGGACGATGGATTAAACATCAAGGAGAGAATTTGTTTTCTGAGTTCTATGATGGATATTGGAAGTGACATTCAAGTTCGTGCAAGTGGGGGCCTTCTTGCCATATTGGAGAATGAGAGGATTGTTGATACCCTTGAGCAAAAGGAATGTGGGAATGCATCAATTACAATTGATTTTGTCACAGAAATTTCATTACACAAATTTCTCAAACTTGATGCAGCAGCTCACGAGGCCTTGCAGATTTTCCAAATAGACAAACACCCAAGCCATATGGGCATTGGTAGAGCAAAAGAAGGGTTCTCTGTGTTTGGAATGATGAATAAGTGTGTAACACCAATGGGTAGACGTCTATTAAGAAACTGGTTCTTGCGGCCTATACTAGACCTTGAAAACTTGAACAGTCGTCTAAATGCTATATCATTCTTCCTTTGTTCTGAAGAATTGACAGTTTCTTTACGAGAAACACTGAAGTCTGTAAAGGATATTCCCTATATATTGAAGAAATTCAACTCCCCAAGCTCCATATGCACAAGCACTGACTGGGCATCCTTTTTGAAGAGTGTTTGTTCACTCTTGCATGTGAACAAGATATTTGAAGTAGGCATTTCAGAAAGTCTTCAAGAGCAAGTGAAGTATTTGAATTTGGACATTGTTGAAAAGGCTCATTCATGCATTACAACAGAGTTGGCTTATGTCTATGAATTGGTAATTGGTGTTATTGATGTGAACAGAAGTAAAGAGAAGGGTTATGGAACACTAGTGAAAGAGGGTTTTTGTGATGAGTTGGATGAGCTAAGGCAAATATATGAAGAATTGCCAGAATTTCTGGAAGAGGTGTCATCATTAGAACTTGCACGACTTCCTCATTTTTGCGGAGGCAAGCTTGTTCCCTGTATTGTTTATATACACCAAATAGGATACTTGATGTGCATTTTTGAAGACAAACTTGATGAAACTACACTAGAAAAACTTCAAGATTTTGAATTTGCATTCTCAGATGGGGATGGAGATACAAAAAAATTCTTCTACCGCACCTCAAAGACGCGAGAATTGGACAACCTACTTGGAGATATATATCATAAAATTCTAGACATGGAGAGGGCAATTACTAGAGACTTGGTGTCACATATACTCCTATTCTCAATGCATTTGCTCAAGGCAGTGAGCTTTGCTGCTGAACTTGATTGCTTTTTGTCATTATCATTGATTGCTCATCAGAACAACTATGTGAGGCCTGTTTTGAGTGCAGATTCATTACTTGATATACGAAATGGAAGACATGTTTTGCAGGAAATGACAGTAGACACATTCATTCCCAATGATACAAAGATTCTTGATGATGGAAGAATTAATATCATCACTGGTCCCAATTATTCAGGGAAGAGCGTCTACATAAAGCAGGTGGCTTTAATTGTTTTCCTTTCCCATATTGGAAGTTTTGTACCAGCAGATGCTGCAACTGTGGGTTTGACAGATAGGATATTTTGTGCAATGGGAAGCAAGCCTATGACTGCAGAACAATCAACATTTATGATTGATCTGCATCAAGTGGGAATGATGTTAAGGCACGCAAACTCTCGATCTTTATGTTTGCTGGATGAATTTGGTAAAGGTACTCTTACAGAAGATGGTATTGGTCTCCTTGGGGGAACTATTAATCATTTTGTTGCAAGTGATGACCCTCCAAAGGTTCTGGTTTGCACTCACTTGACTGAGATGTTCAATGAGAGTTGCTTACCAAAGTCTGAGAAAATCAGGTTTTACACCATGAGTGTGCTGAGACCTGACAACAACTGTACAGATATTGAAGATATCGTATTCCTTTATCGGCTAGTTCCTGGACATGCACTTCTTAGCTATGGGCTGCACTGTGCACTACTTGCTGGTGTTCCAGAGGATGTTATTAAGAGAGCAGCATGTATATTGGATGCTATTGGAAATAATAAGCATGTTGAGCGTCTGTGCAACGAGAGAATATCGGCTCAGGATCAGCTGTACAAGGATGCAGTGGACAAGATGTTGGCATTTGACATTCTCAAGGGCGATCTCAACCTCTTTTTCCAAGACATCTTTCCTTCTTAA 2382 39.63 MACILHGHRVGISYYDSSIRQLHVLEVWEDGSSDFPLIDLVKYQAKPLIIYTSTKCEDSFLSALQRSDGTTEAPTVKLMKSSIFSYEQAWHRLIYLRVTGMDDGLNIKERICFLSSMMDIGSDIQVRASGGLLAILENERIVDTLEQKECGNASITIDFVTEISLHKFLKLDAAAHEALQIFQIDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNSRLNAISFFLCSEELTVSLRETLKSVKDIPYILKKFNSPSSICTSTDWASFLKSVCSLLHVNKIFEVGISESLQEQVKYLNLDIVEKAHSCITTELAYVYELVIGVIDVNRSKEKGYGTLVKEGFCDELDELRQIYEELPEFLEEVSSLELARLPHFCGGKLVPCIVYIHQIGYLMCIFEDKLDETTLEKLQDFEFAFSDGDGDTKKFFYRTSKTRELDNLLGDIYHKILDMERAITRDLVSHILLFSMHLLKAVSFAAELDCFLSLSLIAHQNNYVRPVLSADSLLDIRNGRHVLQEMTVDTFIPNDTKILDDGRINIITGPNYSGKSVYIKQVALIVFLSHIGSFVPADAATVGLTDRIFCAMGSKPMTAEQSTFMIDLHQVGMMLRHANSRSLCLLDEFGKGTLTEDGIGLLGGTINHFVASDDPPKVLVCTHLTEMFNESCLPKSEKIRFYTMSVLRPDNNCTDIEDIVFLYRLVPGHALLSYGLHCALLAGVPEDVIKRAACILDAIGNNKHVERLCNERISAQDQLYKDAVDKMLAFDILKGDLNLFFQDIFPS* 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6732345 6747822 - Vvi19g533 Vvi19g533 782032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g533 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 744 IPR027417 -
Vvi19g533 793 ProSitePatterns DNA mismatch repair proteins mutS family signature. 628 644 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi19g533 793 Pfam MutS domain V 552 743 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi19g533 793 CDD ABC_MSH5_euk 521 730 - -
Vvi19g533 793 Gene3D - 509 778 IPR027417 -
Vvi19g533 793 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 8 777 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vvi19g533 793 SMART DNAend 197 533 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vvi19g533 793 PANTHER MUTS PROTEIN HOMOLOG 5 8 777 - -
Vvi19g533 793 SUPERFAMILY DNA repair protein MutS, domain III 172 508 IPR036187 -
Vvi19g533 793 Gene3D - 169 389 - -
Vvi19g533 793 Pfam MutS domain III 176 501 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vvi19g533 793 SMART mutATP5 548 743 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi19g533 793 PIRSF MSH2 5 776 IPR011184 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g533 K08741 MSH5; DNA mismatch repair protein MSH5 - vvi:100252044 1583.16
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g533 . . . . . . Bma10g00555 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1154 . . . . . Blo07g00899 . Bda05g00714 . . Bpe03g00787 . . . . . . . . . Cpe14g00746 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004808 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 4 1 1 1 1 1 40