Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g536 ATGCAAATGCAGAGCAGGCATTTTTCTTCAGACAATGGTGATTTGGTTGATGCTGTTGTCCCTTTTATGGGTGAATATATTAGCGACGGCATTCTGGCAAAATTCTTGAAGAATGCTGGTGACAGAGTGCAAGTTGATGAGCCTATTGCTCAAATTGAGATAGATAAGGTAACAATTGATGTTGCTAGTCTCAAGGCGGGTGTGATCCAGAAGTTTGTTGCAAAGGAAGGAGATGTTGTAGACCCAGGTACTAAGATTGCTGTCATTTCAAAATCTGGTGAGAGTGTAACCCATGTTGCTTCATCCAAGAAGAAATTGGACGAAGCTGCTCCCAAGCCACCTCCTGCTGCTGAAATTAAAAATGAGAATAAAAAATCCAAACCTGAAACAGCTCCTGTTATGGGGAAGCCGAAAGTACCCCCATCACCACCTCCTAAACAGTCTGCCTCAGAACCCGTGCTTCCTCCTAAGGAAAGGGAAAGACGCATAAGTCTTGTTCCCATGACAAGGCTTCGGAAACGGGTTGCAATGCATTTGAAAGATTCTCAAAACACTTTTGCTATGTTGAAAACATTCAATGAATTTGATATGACCAATTTGATGAAGCTTCGTTCTGATTATAAAGATGCATTTTTTGAAAAGCATGGTGTGAAGTTAAGATTTATGTCAGGGTTTGTTAAGGCTGCTGTAAGTGGGCTTCAGAATCAGCCTATCATCAATGCGGTCATTGATGGGGATGATATCATATATAGAGATTATATAAATATCAGCATAGCTGTTGGAACTCCAAAGGGCCTCGTAGTTCCAGTTATTTGTGATGCTGGTAGGATGAATTTTGCTGAGATAGAGAAGGAGATCAATACACTGGCCAAGAAAGCAAATGATGGAACCATATCAATTGATGAGATGGCTGGAGGTTCATTCACAATATCCAATGGTGGTGTGTATGGAAGCCTTTTGAGTACTCCCATCATCAATCCCCCTCAGTCGGCAATCCTGGGTATGTACTCTATAGTGAAACGTCCCATGGTCGTTGGAGGCAACATAATTGCAACGTCAATGATGTACATTGCTTTGACATACGATCATTGGCTAATTGATGGAAGAGAGGCAGTGTTGTTCTTGCGCCACATCAAAGAAGTCATGGAGGACCCTTGCTGTCTGCTTCTTGACATATGA 1179 41.98 MQMQSRHFSSDNGDLVDAVVPFMGEYISDGILAKFLKNAGDRVQVDEPIAQIEIDKVTIDVASLKAGVIQKFVAKEGDVVDPGTKIAVISKSGESVTHVASSKKKLDEAAPKPPPAAEIKNENKKSKPETAPVMGKPKVPPSPPPKQSASEPVLPPKERERRISLVPMTRLRKRVAMHLKDSQNTFAMLKTFNEFDMTNLMKLRSDYKDAFFEKHGVKLRFMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYINISIAVGTPKGLVVPVICDAGRMNFAEIEKEINTLAKKANDGTISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMYSIVKRPMVVGGNIIATSMMYIALTYDHWLIDGREAVLFLRHIKEVMEDPCCLLLDI* 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6806652 6810038 + Vvi19g536 Vvi19g536 782035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g536 392 MobiDBLite consensus disorder prediction 134 151 - -
Vvi19g536 392 CDD lipoyl_domain 19 89 - -
Vvi19g536 392 Gene3D - 15 92 - -
Vvi19g536 392 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 165 389 IPR001078 GO:0016746
Vvi19g536 392 TIGRFAM sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 155 391 IPR006255 GO:0004149|GO:0006099|GO:0045252
Vvi19g536 392 Pfam Biotin-requiring enzyme 20 89 IPR000089 -
Vvi19g536 392 Gene3D - 147 387 IPR023213 -
Vvi19g536 392 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 40 69 IPR003016 -
Vvi19g536 392 ProSiteProfiles Biotinyl/lipoyl domain profile. 15 90 IPR000089 -
Vvi19g536 392 SUPERFAMILY Single hybrid motif 16 103 IPR011053 -
Vvi19g536 392 SUPERFAMILY CoA-dependent acyltransferases 164 391 - -
Vvi19g536 392 MobiDBLite consensus disorder prediction 97 162 - -
Vvi19g536 392 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED 1 392 - -
Vvi19g536 392 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 1 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g536 K00658 DLST, sucB; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] - vvi:100257173 656.751
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g64 Vvi19g536 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g536 . . . . Bpe09g00166 . Bma10g00562 Bma13g01068 . . Cma01g01120 Cma09g00960 Car01g00994 Car09g00875 Sed07g2678 Cpe06g00776 Cpe02g00780 Bhi09g01660 Tan01g4573 Cmetu01g1279 . . Mch11g1200 . . . . . . . . . . Cone14ag1156 . Lsi02g01894 Csa07g01104 . . Blo07g00897 Blo10g00841 . Bda12g00921 . Bpe03g00785 . . . Cmo01g01170 Cmo09g00960 . . . . . . . . . . . . . Cla09g01019 Cam09g1075 Cec09g1075 Cco09g1094 . . Cre09g1040 . . . Cme01g01018
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003198 2 2 3 4 3 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 3 2 49