Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g539 ATGGGAACCAAATGTAGAACTGTTGCAGTTGCACTCTTCCTTTCAATCCTTATGTTTTCACCAGAATTTTCGGCCTCAGATGGTGGATTGGTTAGAATTGGACTCAAAAAGAGGGCTTTTGATCAAACCAACCGCCTAGCTGCACGGATAGAGTCCAAGCAAGGGGAGGCCTTGGGAACTTCAATTCGGAAGTATAATCTTCATGGGAATGCTGCGGGATCGAAACACACGTATGTTGTGGCACTACACAACTACATGGATGCTCAATATTTTGGGGAAATCAGTATTGGAACTCCCCCTCAAAAGTTCACTGTAATATTTGACACTGGCAGTTCTAATCTGTGGGTGCCCTCTTCTAAATGTTACTTTTCGGTTGCATGCTATTTCCACTCCAAGTACAAGTCAAGCCAATCAAGCACCTACAAAAAGAATGGGACATCAGCAGATATCCATTATGGAACTGGTGCTATTTCTGGTTTCTTCAGTAAAGACGATGTAAAAGTTGGTGACCTTGCAGTCATAAATCAGGAATTTATTGAGGCAACGAAAGAACCCAGCATCACATTTGCTTTGGCCAAGTTTGATGGCATACTTGGACTTGGGTTTCAAGAGATTTCAGTTGGAAATGCTGTGCCTGTGTGGTACAACATGATCAATCAAGAACTTATTAAAGAACCAATTTTCTCATTTTGGTTTAACCGAAACTCCAATGAAGAAGTAGGGGGTGAAATTGTATTTGGTGGTATTGATTCTGATCATTACAAGGGTAAGCACACCTATGTTCCTGTAACAAAGAAAGGCTATTGGCAGTTTGATCTGGGTGATGTCATGATTGGTGGTAAAACAACTGGATTTTGCGCTAGTGGCTGTTCAGCAATTGCTGATTCTGGAACCTCTCTGTTAGCTGGTCCAACAACAATTATTACTGAAGTCAATCATGCCATTGGAGCCTCTGGGTTTGTAAGCCAAGAATGCAGAGCAGTTGTCCAACAATATGGGCAAATAATAATTGACATGCTATTAACAAAGGAGCAACCTCAGAAAATCTGCTCACAAATTGGTTTGTGCGCTTTCAATGGTATTCGAGGTGTTAGTATGGGCATTGAGAGTGTCGTGGATGAGAACAATAGCAAGGCATCTGATGGTCTGCATGATACCATGTGCTCTGCCTGTTCAATGGCAGTTGTCTGGATACAAAATAAGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTAGTCTGTCTTCAATGCCTAATGTTTCGTTAACCATTGGTGGAAAAGTATTTGATCTCAGCCCCAAGCAGTACATCCTCAAAGTGGGTGAGGGAGAAATAGCTCAATGCATTAGTGGATTTACAGCTTTGGATGTGCCACCTCCTCATGGACCTCTCTGGATCCTGGGTGACGTTTTCATGGGTCAGTACCACACGGTATTTGATTACGGAAATATGAAAGTTGGATTCGCGGAAGCTGCATAA 1545 42.39 MGTKCRTVAVALFLSILMFSPEFSASDGGLVRIGLKKRAFDQTNRLAARIESKQGEALGTSIRKYNLHGNAAGSKHTYVVALHNYMDAQYFGEISIGTPPQKFTVIFDTGSSNLWVPSSKCYFSVACYFHSKYKSSQSSTYKKNGTSADIHYGTGAISGFFSKDDVKVGDLAVINQEFIEATKEPSITFALAKFDGILGLGFQEISVGNAVPVWYNMINQELIKEPIFSFWFNRNSNEEVGGEIVFGGIDSDHYKGKHTYVPVTKKGYWQFDLGDVMIGGKTTGFCASGCSAIADSGTSLLAGPTTIITEVNHAIGASGFVSQECRAVVQQYGQIIIDMLLTKEQPQKICSQIGLCAFNGIRGVSMGIESVVDENNSKASDGLHDTMCSACSMAVVWIQNKLGQNETIDRILKYVNELCDRLPSPMGESAVDCGSLSSMPNVSLTIGGKVFDLSPKQYILKVGEGEIAQCISGFTALDVPPPHGPLWILGDVFMGQYHTVFDYGNMKVGFAEAA* 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6870993 6878047 - Vvi19g539 Vvi19g539 782038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g539 514 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 105 116 IPR001969 GO:0004190|GO:0006508
Vvi19g539 514 ProSiteProfiles Peptidase family A1 domain profile. 90 511 IPR033121 -
Vvi19g539 514 Gene3D Acid Proteases 249 514 IPR021109 -
Vvi19g539 514 SMART sapb_4 284 356 IPR008139 -
Vvi19g539 514 Pfam Saposin-like type B, region 1 387 423 IPR007856 GO:0006629
Vvi19g539 514 ProSiteProfiles Saposin B type domain profile. 384 425 IPR008139 -
Vvi19g539 514 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 292 303 IPR001969 GO:0004190|GO:0006508
Vvi19g539 514 PANTHER ASPARTIC PROTEINASE-LIKE 7 514 - -
Vvi19g539 514 Gene3D Acid Proteases 31 248 IPR021109 -
Vvi19g539 514 PRINTS Pepsin (A1) aspartic protease family signature 96 116 IPR001461 GO:0004190|GO:0006508
Vvi19g539 514 PRINTS Pepsin (A1) aspartic protease family signature 242 255 IPR001461 GO:0004190|GO:0006508
Vvi19g539 514 PRINTS Pepsin (A1) aspartic protease family signature 292 303 IPR001461 GO:0004190|GO:0006508
Vvi19g539 514 PRINTS Pepsin (A1) aspartic protease family signature 487 502 IPR001461 GO:0004190|GO:0006508
Vvi19g539 514 Pfam Saposin-like type B, region 2 323 356 IPR008138 -
Vvi19g539 514 SUPERFAMILY Acid proteases 12 513 IPR021109 -
Vvi19g539 514 Pfam Eukaryotic aspartyl protease 89 513 IPR033121 -
Vvi19g539 514 SUPERFAMILY Saposin 321 423 IPR011001 -
Vvi19g539 514 Gene3D - 320 423 - -
Vvi19g539 514 ProSiteProfiles Saposin B type domain profile. 320 360 IPR008139 -
Vvi19g539 514 CDD phytepsin 80 512 IPR033869 GO:0004190
Vvi19g539 514 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 7 514 IPR001461 GO:0004190|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g539 K08245 E3.4.23.40; phytepsin [EC:3.4.23.40] - vvi:100267436 1023.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g55 Vvi19g539 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g539 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1160 Cone15ag1176 . . . . . . . . . . . . . . . . . . . Cpe14g00744 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000456 7 5 6 5 6 2 4 2 4 3 2 4 3 3 3 4 4 6 3 4 3 3 3 3 3 3 3 5 5 5 116