Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g540 ATGGACTTCTTTGCTCAGAAAGAAACAGCGAGGGTGGATGTCAAGAGGGAGACAACCGCACATGATGGGCTGGTGCAAGGTTTCCACATAAATACTGGGTTGAATCTTCACTTAGCGAGCGGTGGTAGCGAAAAATCTTCGGTGGATGGTGGAACATCACCTAGCAACAAGGAAAAGCTCAACATGAGTGATAAGATGGTAGGTCTACGGGCTGAGTTAGAGAATATGAACAAGGAAAATAAACAGTTGAGAGCCATGCTGAGTCAAGTCAACAATAACTACTCCGCCCTACAGATGCATGTTGTAACGCTGATGCAAAGGCAACACAATCGGAGAGCTGAAATCTCCCTAGCAAACGAGGTGAATACTGAAGGAAAAGTGGGAGAGAGGAACAGAAATGAAACCATCGTTCCAAGGCAATTCATGGATTTGGGTCGGGCGTCTATGGCCGAAAAGGATGAGTCATCACCATCTTGGTCGGGTTCCAGATCTCCTCAAACCAATGAAGATGCATCCAGGGAGTCAAGGAGGCGGAAGACTGGCAGTACTAGTAATGAAAACAAGGATGGAGGAAGAGAAGAGAGTTCAGACCAATCATTACAAGGCGGGCTTCCTAACAAAGTCCCTAAATTTAATTGTTCACAGAATGTCGAACAGGCCTCAGAAGCCATGTCCATGATGAGGAAAGCTCGGGTCTCAGTTCGAGCAAGATCGGAGGCATCCATGATCTCCGATGGATGCCAATGGAGAAAGTATGGACAAAAGATGGCGAAAGGAAACCCATGCCCTCGAGCTTATTATCGATGCACCATGGCAACTGCTTGTCCAGTTCGCAAACAAGTCCAGAGATCTGCAGAAGATCGGACCGTCCTCATAACAACTTATGAAGGCCATCACAACCATCCCCTACCTCCGGCTGCCATGGCGATGGCCTCGACCACATCAGCTGCTGCAACAATGCTACTTTCGGGATCAATGCCGAGCTCAGATGGGATAATGAGCTCGAGCTTTCATTCAAGGACTATGTTCCCATGCTCCCCAAGCTTGGCAACGATTTCAGCTTCAGCGCCCTTTCCCACTATTACATTAGATCTTACACACAGCCCGAACCTCTTACAGCACCAGAGGCCGAATGCCCAATTCCATGTCCCTTTCCAAAACCTTCCCCAGAATTTTGCTCCTGGGTCGCACGCTTTCAATCCAGTGCTTCACAGCCAATCCAAATTCTCCGCCCTTCAAAGCTCCCCAGAAATGCAGCCTCCTCAAGTAGGAACCGAGCAAGTGCTGAAGCCATCGTCATCATCCTCAGACACAGTAACTGCAGCAACGGCTGCCATCACCGCAGACCCGAACTTCACTGCAGCTCTAGTGGCAGCCATCACTTCCATTATTGGCAATGTTCATCCAAACAATAGTAGTAACAGTAGTACCAACACAAGAAGCACCAATGTCGACAATAATATTGGGAACTCAAATTTGGTAGGGAATTAA 1491 48.09 MDFFAQKETARVDVKRETTAHDGLVQGFHINTGLNLHLASGGSEKSSVDGGTSPSNKEKLNMSDKMVGLRAELENMNKENKQLRAMLSQVNNNYSALQMHVVTLMQRQHNRRAEISLANEVNTEGKVGERNRNETIVPRQFMDLGRASMAEKDESSPSWSGSRSPQTNEDASRESRRRKTGSTSNENKDGGREESSDQSLQGGLPNKVPKFNCSQNVEQASEAMSMMRKARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATACPVRKQVQRSAEDRTVLITTYEGHHNHPLPPAAMAMASTTSAAATMLLSGSMPSSDGIMSSSFHSRTMFPCSPSLATISASAPFPTITLDLTHSPNLLQHQRPNAQFHVPFQNLPQNFAPGSHAFNPVLHSQSKFSALQSSPEMQPPQVGTEQVLKPSSSSSDTVTAATAAITADPNFTAALVAAITSIIGNVHPNNSSNSSTNTRSTNVDNNIGNSNLVGN* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6882418 6884988 - Vvi19g540 Vvi19g540 782039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g540 496 Gene3D WRKY domain 227 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g540 496 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 13 476 - -
Vvi19g540 496 Coils Coil 59 93 - -
Vvi19g540 496 MobiDBLite consensus disorder prediction 39 59 - -
Vvi19g540 496 ProSiteProfiles WRKY domain profile. 238 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g540 496 MobiDBLite consensus disorder prediction 409 435 - -
Vvi19g540 496 SUPERFAMILY WRKY DNA-binding domain 236 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g540 496 MobiDBLite consensus disorder prediction 153 168 - -
Vvi19g540 496 MobiDBLite consensus disorder prediction 148 212 - -
Vvi19g540 496 SMART WRKY_cls 243 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g540 496 MobiDBLite consensus disorder prediction 466 496 - -
Vvi19g540 496 MobiDBLite consensus disorder prediction 196 212 - -
Vvi19g540 496 MobiDBLite consensus disorder prediction 169 195 - -
Vvi19g540 496 Pfam WRKY DNA -binding domain 245 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g540 496 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 13 476 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g54 Vvi19g540 ECH
Vvi12g396 Vvi19g540 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14425 PF03106 WRKY 6.60E-24 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g540 - - vvi:100245129 924.85