Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g541 ATGGTTTCTTCTATGAATATAGATGGAAACAATGAAGCAATTCCTAAGCATCTGCCTCCTAAAGAAAAAGCTCCTCTGTCAAAAAGGAACCGTGTTGCCAGTACAGTTAAGGGTGGAGCTGCAAGTAGCTTGAAAAAGAAAGGTGAAGACTTGGGTTCACTTGGTGCTGCCATGGACAAGTCACAGACTTCTGCATTGCCAAGCACCTCCAAGGTTAAAACATTGGTTTTGGAGCCTCCCTCTGATTTAAAGAGATTGGTTGATAAGATAGTTGAGTTCATTCTAAAAAATGGGAAGGAATTTGAGGCAGTGCTTGTTGAACAGGACAATAAACATGGGAGATTTCCATTTCTTCTGCCATCCAACCAGTATTACCCTTATTATCTGCAAGTTCTTCAAAAAGCTCAAGAGTCAAAATTAACTGGCAAGAATCTCAATTCAGAGAAGGATGGGCTGGACAAAAGAACTGCTTCATCCAATGATGCTGCCTCCTTGGGTTCTTCTTATCATGATATGCCATTTGATTCTGACAGGAAAGAAAAGTTTAAGATGGTACTTGGCAAGTCAAGGAAAGATGGACAGGATCATCCTTCCAAACCGACCCAGCAACAGATTGGTGTTAGCTTGGATACAGCTGCAGCCATTCTTCAGGCTGCCACGAGAGGCATTAAGAATCCCAATTTCGACATTCTTCCAAGGACATCATCAAATGGTATCAGTAATGGCCTTAGCAGTGAGGGTGGGCAGGCTTCTAGGCCCAGTGTTTCTGTCCCTGTTGCCAAGGCTATTGCAAATACAGCAGCACTTGCTGCTGCAAGTGAGGCTGACTCATCTGAAGCACACTTGACTAAAGAGCAGAAGCTGAAGGCTGAAAGATTGAAACGAGCAAAGATGTTTGCAGCCATCATAAAAGGAGGAGCTGGGCCTTTAAAAACTGAAACAGTCCCTTTAAATCTTGCCAGCAAAGAAAGAGAAGGCAGCTCAGTTCCAGTAGATGTTGATACATCCGGCAAAACTGAGAAGCCAGAAAGAGAACATTCTGACACTGAACATAATGAACGGCGATCAAGGAGGAAGTATCGAAGGGATCGCAAGCACTCTAGGAAGAAGCACCGCTCTCATCATTCTTCACATTGCAGTAGAGACAGGCATAAGCATAGAAAAAGGCATTCTTCTTCCAAGGACCGAGAGTCTCGGCATCGGCACAAGCATGAGTATTCTGATGATGAGCATCGGGACCGAAGAAAACGAAGTAAGAAATCTAATTCAGAAAGAGAAGCAGACTTGGAAGAAGGGGAGATCAGTACAAAATCCTCAGATCAATCAAAAGTCAGTGTGGGTGAAGGTGCCAGTAGAGAAGCTTCCGTGGATTTATCAAATTCCCACCAAGATCCTAGGCCCCCATCTCAGCCCTCTGATACCACCCAGGTTTCCGATGATCTTAGAGCCAAAATTCGGGCAATGTTACTGGCAACCTTGTAG 1482 44.26 MVSSMNIDGNNEAIPKHLPPKEKAPLSKRNRVASTVKGGAASSLKKKGEDLGSLGAAMDKSQTSALPSTSKVKTLVLEPPSDLKRLVDKIVEFILKNGKEFEAVLVEQDNKHGRFPFLLPSNQYYPYYLQVLQKAQESKLTGKNLNSEKDGLDKRTASSNDAASLGSSYHDMPFDSDRKEKFKMVLGKSRKDGQDHPSKPTQQQIGVSLDTAAAILQAATRGIKNPNFDILPRTSSNGISNGLSSEGGQASRPSVSVPVAKAIANTAALAAASEADSSEAHLTKEQKLKAERLKRAKMFAAIIKGGAGPLKTETVPLNLASKEREGSSVPVDVDTSGKTEKPEREHSDTEHNERRSRRKYRRDRKHSRKKHRSHHSSHCSRDRHKHRKRHSSSKDRESRHRHKHEYSDDEHRDRRKRSKKSNSEREADLEEGEISTKSSDQSKVSVGEGASREASVDLSNSHQDPRPPSQPSDTTQVSDDLRAKIRAMLLATL* 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6892723 6895966 - Vvi19g541 Vvi19g541 782040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g541 493 MobiDBLite consensus disorder prediction 336 356 - -
Vvi19g541 493 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 6 492 IPR040397 -
Vvi19g541 493 MobiDBLite consensus disorder prediction 398 437 - -
Vvi19g541 493 MobiDBLite consensus disorder prediction 1 65 - -
Vvi19g541 493 MobiDBLite consensus disorder prediction 357 397 - -
Vvi19g541 493 Gene3D Surp module 70 141 IPR035967 GO:0003723|GO:0006396
Vvi19g541 493 PANTHER SPLICING FACTOR, SUPPRESSOR OF WHITE-APRICOT HOMOLOG 6 492 - -
Vvi19g541 493 MobiDBLite consensus disorder prediction 319 481 - -
Vvi19g541 493 ProSiteProfiles SURP motif repeat profile. 86 128 IPR000061 GO:0003723|GO:0006396
Vvi19g541 493 SMART surpneu2 84 137 IPR000061 GO:0003723|GO:0006396
Vvi19g541 493 MobiDBLite consensus disorder prediction 438 478 - -
Vvi19g541 493 Pfam Surp module 85 133 IPR000061 GO:0003723|GO:0006396
Vvi19g541 493 SUPERFAMILY Surp module (SWAP domain) 59 133 IPR035967 GO:0003723|GO:0006396
Vvi19g541 493 MobiDBLite consensus disorder prediction 143 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g541 - - - vvi:100250252 758.059
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g541 . . . . Bpe09g00164 . . Bma13g01069 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda12g00923 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016228 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 8