Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g546 ATGTACTCTTCTAATTGTCCTAAGCCACTACTCATCTTCCCAATATTGGCTACTCTCTGCCTCCTCTCCACCACCACCTCCACTGCCCAAGCCAGCACCCAATGCAGTGAGCAATTCGAATTGATGATCACCAATGGAAATGGAAGAAACAAGCCAAAATGCCAGAAGTTGACAACTCTAAAGGCTGAATTCGGTTGGACTATTCTTAAGAATAAGTCCATCGATATCTTCTTCGGCGCAAGGCTGGATAACGACGAGGGGTGGCTGGCCTGGGGTGTGAACCCTGGGAAGAGGCCACAGATGGTCGGGACAAGAGCCATCATAGGCATTAAGAACCCAAATGGGAGCCTAATGGTGAACACTTACAACATCACTAGTGGCACTAAGCTCGGCTGCCAGTTGCTTCCGTCCGAGCTTCATGATGATAATGATGTGTTGTTTAGTAACAGGAAAATCTTCATCAACCAAACAGAGCTCGTGGTAATATCTGCAACAGTAACTCTCCCTTCTGAATACAACATTACGGACCTCCATCATGTGTGGCAAGTTGGGGCTAAGGTCGATGGGAATGAGCCCAAGATGCACCCGACCACCCTCCAGAACGTTGATAGTACCGAGACCATAAACTTGAACACCGGGGAAGGCCACAGCGTCGGACAGCACCGGCGTCACCTAAGAACGGTTCATGGGATTCTGAACATTGTGGGGTGGGGGACTCTGCTACCCATGGGCGTGATCGTGGCGAGGTACTTCAGGAAATTTCCCTTTAAAAACACATACTGGTTCTTAGCTCATATCTACATACAAATTATTGGGTACACTCTGGGCACAATCGGGTGGGCCATTGGCCTGGTGCTGGGACACTCCTCTAGATACTACACCTTCCGCATTCATCGAATCCTCGCAATATTCATATTCACCTTCACAAGCTTACAAATGTTGGCGTTGAGATTGAAGCCAGAGACAAAGGATGAATATAGGAAGTACTGGGACATGTACCACCACTTCCTGGGGTACTCGCTTCTGGCCTTGATATCTGTAAATATATTTCAGGGGATTGCCATCTTGAAGCCTGACAAAACCTGGAAATGGGTGTACATTGGAGTGCTTGGGGCTTTGGCTTCCATCACTTTAGTCTTTGAGATCTGTACTTGGGTAAAATTCCTAAAGCAGAAGAAAAAGGACAAGGATGCCACCAAACAACAAGCTGGTGCACCAGGTGGCGGAGGAGCCCCTACTGGAGGAGGAGCCCCTACTGGCGGAGGAGCCCCTACTGGCGGAGGAGCTCCTACTGGCGGCGGAGGAGCTCCTACTGGCGGCGGAGGAGCTCCTACTGGCGGCGGAGGAGCTCCTGATGGAGGACCGCCTCTATAA 1374 50.07 MYSSNCPKPLLIFPILATLCLLSTTTSTAQASTQCSEQFELMITNGNGRNKPKCQKLTTLKAEFGWTILKNKSIDIFFGARLDNDEGWLAWGVNPGKRPQMVGTRAIIGIKNPNGSLMVNTYNITSGTKLGCQLLPSELHDDNDVLFSNRKIFINQTELVVISATVTLPSEYNITDLHHVWQVGAKVDGNEPKMHPTTLQNVDSTETINLNTGEGHSVGQHRRHLRTVHGILNIVGWGTLLPMGVIVARYFRKFPFKNTYWFLAHIYIQIIGYTLGTIGWAIGLVLGHSSRYYTFRIHRILAIFIFTFTSLQMLALRLKPETKDEYRKYWDMYHHFLGYSLLALISVNIFQGIAILKPDKTWKWVYIGVLGALASITLVFEICTWVKFLKQKKKDKDATKQQAGAPGGGGAPTGGGAPTGGGAPTGGGAPTGGGGAPTGGGGAPTGGGGAPDGGPPL* 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6956977 6958495 + Vvi19g546 Vvi19g546 782045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g546 457 SMART 561_7 228 353 IPR006593 -
Vvi19g546 457 ProSiteProfiles Cytochrome b561 domain profile. 191 389 IPR006593 -
Vvi19g546 457 CDD Cyt_b561_FRRS1_like 203 382 - -
Vvi19g546 457 PIRSF UCP037471 10 408 IPR017214 -
Vvi19g546 457 Pfam Protein of unknown function (DUF568) 101 210 IPR045265 -
Vvi19g546 457 ProSiteProfiles DOMON domain profile. 60 184 IPR005018 -
Vvi19g546 457 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 5 404 - -
Vvi19g546 457 MobiDBLite consensus disorder prediction 396 457 - -
Vvi19g546 457 CDD DOMON_CIL1_like 52 212 IPR045265 -
Vvi19g546 457 Gene3D - 207 398 - -
Vvi19g546 457 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 5 404 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g546 - - - vvi:100265906 786.178
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g51 Vvi19g546 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g546 . . Bda07g00372 . Bpe09g00163 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0052 Cone9ag0062 . . . . . . . Blo10g00842 . . Bpe11g00557 . . Bma14g00329 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011685 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 30