Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g547 ATGGCTGCTCCGGCCATGGAAGGCCTCGCCGTCACAGCTCTCCGGTCCGCTATGCTCCGTGTCCGTCAAGCGGCAGAGAGGTCCGGTCGCCGGTCCGATCAGGTCCGCGTTGTGGCTGTCTCAAAAACCAAACCAGTCTCTCTCATCCGGCAAGTCTACGACGCCGGTCACCGTTGTTTTGGCGAAAACTACGTTCAAGAGATAAACGAAAAAGCACCACAGCTTCCAGAGGACATTGAATGGCATTTTATTGGGCATTTGCAGAGCAATAAAGTGAAACCGCTTCTGGCTGCAGTCCCCAATCTTGCCATGGTTGAAGGTGTAGATAATGAGAAGATTGCAAATCAGCTTGATCGTGTGGTTTCAGGCATCAGAAGGAAGCCTTTGAAGGTTTTGGTTCAAGTGAATACTAGTGGAGAAGTATCAAAATCTGGAGTTGAGCCATCAGGTTGTGTGGAGCTAGCTAAACATGTTAAGCTAGGCTGCCCCAATCTCGAGTTTTCTGGTTTAATGACAATAGGGATGCCAGACTATTCATCAACTCCAGAGAACTTCAGGAGACTATTGAACTGTAGAATTGAGGTTTGTAAAGCTCTTGGAATGGCAGAGGAGCAGTGCGAGCTGTCAATGGGCATGTCTGGTGACTTTGAGCAAGCGATTGAAATGGGCAGCACCAATGTGAGAATTGGATCAACCATATTTGGACCAAGGGAGTATCCTAAGAAAGAACAGAATTAG 738 48.1 MAAPAMEGLAVTALRSAMLRVRQAAERSGRRSDQVRVVAVSKTKPVSLIRQVYDAGHRCFGENYVQEINEKAPQLPEDIEWHFIGHLQSNKVKPLLAAVPNLAMVEGVDNEKIANQLDRVVSGIRRKPLKVLVQVNTSGEVSKSGVEPSGCVELAKHVKLGCPNLEFSGLMTIGMPDYSSTPENFRRLLNCRIEVCKALGMAEEQCELSMGMSGDFEQAIEMGSTNVRIGSTIFGPREYPKKEQN* 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6960132 6964793 + Vvi19g547 Vvi19g547 782046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g547 245 ProSitePatterns Uncharacterized protein family UPF0001 signature. 81 95 IPR011078 GO:0030170
Vvi19g547 245 SUPERFAMILY PLP-binding barrel 14 235 IPR029066 -
Vvi19g547 245 PIRSF YBL036c_PLPDEIII 1 243 IPR011078 GO:0030170
Vvi19g547 245 Hamap Pyridoxal phosphate homeostasis protein. 12 236 IPR011078 GO:0030170
Vvi19g547 245 Gene3D Alanine racemase 3 245 IPR029066 -
Vvi19g547 245 Pfam Alanine racemase, N-terminal domain 20 237 IPR001608 -
Vvi19g547 245 PANTHER PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN 5 243 IPR011078 GO:0030170
Vvi19g547 245 PANTHER PYRIDOXAL PHOSPHATE HOMEOSTASIS PROTEIN 5 243 - -
Vvi19g547 245 CDD PLPDE_III_YBL036c_euk 14 235 - -
Vvi19g547 245 TIGRFAM TIGR00044: pyridoxal phosphate enzyme, YggS family 21 237 IPR011078 GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g547 K06997 yggS, PROSC; PLP dependent protein - vvi:100255429 487.263
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi10g50 Vvi19g547 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g547 . . . . . . Bma10g00564 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00894 . Bda05g00711 . . Bpe03g00783 . . . . . . . . . Cpe14g00742 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002558 2 7 2 3 2 2 1 2 2 1 0 2 1 1 1 2 2 2 2 1 2 2 2 2 2 2 2 2 3 2 59