Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g550 ATGGCATCTGCTGAGAGTTTGGTTCTTGAACTTATCAACCCCGATCTTCGTGAAAATGCTTTGCTTGAACTCTCTAAGAAGAGAGAATTATTTCAAGATTTGGCTCCATTATTGTGGAATTCTTTTGGTACTATTGCTGCACTATTGCAGGAGATAGTTTCAATTTATCCTGTTCTATCACCACCAAATCTAACTCCAGCACAATCAAATCGGGTCTGCAATGCACTTGCCCTTCTCCAGTGTGTAGCTTCTCATTCAGAAACAAGGATGCTGTTCCTAAATGCCCACATACCCTTGTACCTGTACCCTTTCCTCAATACCAATAGCAAATCTAGGCCTTTTGAGTACTTGAGACTAACTAGCCTAGGTGTTATTGGTGCTTTGGTGAAGGTTGATGATACAGAAGTTATTAGTTTCCTTCTCTCAACAGAAATAATTCCGCTGTGCCTACGCACCATGGAGATGGGGAGTGAATTGTCAAAAACAGTTGCCACATTTATTGTTCAAAAAATTCTGTTGGATGATGTGGGCTTGGATTATATTTGTACTACGGCAGAGCGATTTTTTGCAGTAGGTCGAGTTTTGGGGAATATGGTCGCAGCACTTGCTGAGCAACAATCAACAAGGCTTCTTAAGCATATTATTCGATGTTATCTTCGATTATCAGACAACCCAAGGGCTTGTGATGCATTAAGAAATTGCCTTCCGGACATGTTAAAAGACGCCACTTTCAGTAGTTGTCTTCGTGAAGATCCAACAACGAGGAGGTGGTTGCAGCAGCTGCTTCACAATGTTGGGGGAAGCCGGGTTGCTGCATTTCAGGCGGGGGGAGGATTTGACCATATGCTGGTGAACTGA 858 42.77 MASAESLVLELINPDLRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHSETRMLFLNAHIPLYLYPFLNTNSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQQSTRLLKHIIRCYLRLSDNPRACDALRNCLPDMLKDATFSSCLREDPTTRRWLQQLLHNVGGSRVAAFQAGGGFDHMLVN* 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7014971 7045143 + Vvi19g550 Vvi19g550 782049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g550 285 Gene3D - 1 266 IPR011989 -
Vvi19g550 285 SUPERFAMILY ARM repeat 13 262 IPR016024 -
Vvi19g550 285 PANTHER UNCHARACTERIZED 1 283 - -
Vvi19g550 285 PANTHER BNAA05G20110D PROTEIN 1 283 - -
Vvi19g550 285 Pfam Cell differentiation family, Rcd1-like 7 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g550 K12606 RCD1, CNOT9, CAF40; CCR4-NOT transcription complex subunit 9 - vvi:100265941 555.829
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi12g409 Vvi19g550 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g550 . . . . Bpe09g00162 . Bma10g00565 Bma13g01070 . . . Cma09g00964 Car01g00990 Car09g00879 . Cpe06g00779 Cpe02g00784 Bhi09g01681 . . . Hepe01g1257 . . . . . . . . . . . . Cone15ag1177 Lsi02g01890 Csa07g01111 . . Blo07g00893 Blo10g00843 Bda05g00710 . . . . . . Cmo01g01165 Cmo09g00966 . . . . . . . . . . . . . Cla09g01025 Cam09g1080 Cec09g1079 Cco09g1100 . . Cre09g1045 . . . Cme01g01013
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004472 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14426 PF04078 Rcd1 3.40E-129 No_clan Vvi TR