Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g551 ATGGAGGCCTCAGTTGAGGCTGTGGAGAGAATTATTAACTACAAATTTAGGAACAAAAAGCTCTTAGAGGAGGCCTTGACTCATTCATCTTACACTGATTCCGCATCGTATCAACGACTTGAGTTCATTGGTGATGCTGCATTGGGCTGTGCTCTAAGCAATTATGTGTTCCTTGCATACCCATCACTTGATCCCGGTCAACTCTCTCTGATCCGGGCTGCCAATATCAGCACTGAGAAACTTGCTCGTGTGGCTGTTCGAGTTGGGCTTTATCAGTATGTCCGGCACAATGCTGCTGCTCTTGATGATAAGGTTAGAGAATTTGCACTTGCAGTCCAAGAGGAGGGTGATTCTGTTTTGTATGGTGGATCAGTAAAAGCCCCTAAATTTCTCGCAGACATTGTTGAATCTGTGGCAGCAGCAATTTATGTAGATTGTAATTTTGATCTGCAAGTTCTTTGGGTGATCTTTAGGGGTCTCTTGGAGCCTATTGTAACACATGAAGCCTTGCAGCAACAACCCCAACCAGTGACATTGCTCTATGAACTGTGCCAGAAGGATGGAAAGCATGTCGATATCAAGCATTGGAGGAAAGGGTCGAAGAATATTGCTAGTGTTTATGTAGGTGGCAAGTTTATTGCCTCAGGTTCTTCTGACGAGAAGGAAATTGCAAAATTGAATGCTGCAAAGGAAGCCTTGCAGAAGCTGTCATCTAAATTAAAGGACACTGAGATGACCCAGAATAATCTCGAGATCAATGGATCATGTGAGATTGATGGAGCAAAACAGAAGTTACATGAGTTTTGTAGCAAGAAGAAGTGGCCCAAACCAAGTTACCGAATTGAAAAAGAAGTGGGCCCTGCTCATGAAAAGGGATTTTTGTGCTCTGTCCATATCGAAACTGTAGATGGTGTGCTTGTGATGCAGGGAGACACAAAACCAAGAGTAAAGGATGCTGAAAACTCTGCTGCTTCCTTCATGATTTGCACCCTATATGAGTCTAGATATCCGTGA 1014 43.49 MEASVEAVERIINYKFRNKKLLEEALTHSSYTDSASYQRLEFIGDAALGCALSNYVFLAYPSLDPGQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGDSVLYGGSVKAPKFLADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEALQQQPQPVTLLYELCQKDGKHVDIKHWRKGSKNIASVYVGGKFIASGSSDEKEIAKLNAAKEALQKLSSKLKDTEMTQNNLEINGSCEIDGAKQKLHEFCSKKKWPKPSYRIEKEVGPAHEKGFLCSVHIETVDGVLVMQGDTKPRVKDAENSAASFMICTLYESRYP* 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7053770 7059043 + Vvi19g551 Vvi19g551 782050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g551 337 SMART riboneu5 20 170 IPR000999 GO:0004525|GO:0006396
Vvi19g551 337 SUPERFAMILY RNase III domain-like 2 167 IPR036389 GO:0004525|GO:0006396
Vvi19g551 337 Gene3D - 259 333 - -
Vvi19g551 337 SUPERFAMILY dsRNA-binding domain-like 129 236 - -
Vvi19g551 337 Pfam Double-stranded RNA binding motif 176 236 IPR014720 -
Vvi19g551 337 Coils Coil 223 253 - -
Vvi19g551 337 Gene3D Ribonuclease III domain 1 173 IPR036389 GO:0004525|GO:0006396
Vvi19g551 337 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 175 238 IPR014720 -
Vvi19g551 337 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 260 333 IPR014720 -
Vvi19g551 337 Gene3D - 174 249 - -
Vvi19g551 337 Pfam Ribonuclease III domain 38 146 IPR000999 GO:0004525|GO:0006396
Vvi19g551 337 SMART DRBM_3 261 332 IPR014720 -
Vvi19g551 337 SMART DRBM_3 176 237 IPR014720 -
Vvi19g551 337 ProSiteProfiles Ribonuclease III family domain profile. 5 147 IPR000999 GO:0004525|GO:0006396
Vvi19g551 337 PANTHER RIBONUCLEASE 3-LIKE PROTEIN 2-RELATED 5 328 - -
Vvi19g551 337 SUPERFAMILY dsRNA-binding domain-like 261 334 - -
Vvi19g551 337 PANTHER DICER-RELATED 5 328 - -
Vvi19g551 337 CDD RIBOc 20 170 IPR000999 GO:0004525|GO:0006396
Vvi19g551 337 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 260 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g551 - - - vvi:100243580 669.463
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g551 . . . . . . Bma10g00566 . Cmo16g00936 . . . . . . . . . . . . . . . Cla10g00491 Cam10g0482 Cec10g0500 Cco10g0486 Clacu10g0502 Cmu10g1329 Cre10g0732 . . . . . Csa03g00495 . Cme06g02859 Blo07g00892 . Bda05g00709 . . Bpe03g00781 . . Sed08g1364 . . . Cma16g00900 . Car16g00876 Cpe14g00724 . Bhi11g00594 Tan01g1726 Cmetu06g2572 . Hepe06g0003 . . . . . . . . . Lsi05g00580 . Chy06g01831 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004196 1 1 1 2 2 1 1 1 1 2 1 1 1 2 2 1 1 2 1 1 4 2 1 0 1 1 0 3 3 1 42