Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g552 ATGCATGGCCAAGGCGTGTCATCGAGTCCAGGAGCCTGCAAGGGTTTAAAGGTCGATGGGGAAGGAATCAAGGAGCTTTGTTCTGGCTGGAAGTTCATTATTCTGCTTACTCATTTTTGCTTTCCTTTATGTTTGGCTGATTTGAGTTTGTTTGGAGATGAAGGGAAGCACCATTTATGGAATTGGGGTAGAAGCTCTAGTCATGCTGCAGAGAAGATTGATAGAGACATGGAAGAGAGAGAACCACTGAGGTCCATTCTGAGAAGGCTAGTGAGAGGGGAAGATCGAGTCAAGCTTGAAGCCACTGGATTTTCTTGCTACTCAGATCTTCATTCAGAAGTCTGCGTCACCGATAAACCAGTTAGGATCAACAACCATACAGTTTACGTATTGTCTGATCAAAGTTCAGATGAATTTAAACAGAGTGTTCAGCCATATGCAAGGAAAGATGACGAAATCGCCATGAAGGCTTTTGTCATTACTGACGATAAGCCTTGGATGGTCGAAAGGTACAAGAGGATTCTGAAACAGTTGTCTGCATACAACGCTATAAACCCAGCAGAAGATGGAAGCGTGCACTGCTTCCCAGGGGCTGTTATCGGTCTCAAGTATCACGACAATCTGGCCCTCAATACCAGTGACATTCCTGGAGGCTACTCCATGAGTGACTTCAAGCATTTTCTCAGAAAATCATACAGCCTGAAGATTACAACTGCGTCTGAGATAGAACACCCTAAGCCTGTGCTGATTCTAATATCTCGTCGTACAACTAGGAAGTTCTTGAATGAAGATGAAACGGTGGGTTTGATGGAGGACCTAGGGTTTCAGGTGATCATAACACCGCCTTATAACATGTCAAGCTTGGACAAGTTTGCCCAGGTTGTGAACTCGTGTAGTGTGATGGTAGGAGCCCATGGTGCCGGCCTAGCAAACTCAGTATTGCTGCCTGCCGGAGCAGTGACGGTGCAGGTGGTGCCACTGGGGCTGGACAGGGCATCGGCAGCCAACTATGGAGACCCAGCTAGAAAGATAGGTGTGCAGTATTTGGAGTACAAGATTGAGGCAGAAGAGAGTTCCCTCTTTGATTTATATGGTCGGGATCAACCGATTATTGCCGATCCCCAATCCATACATTTGAAAGGCTATGATGTTGCTAGAGCTGTGTATCTGGACGGGCAGGATATGAAGATCAACCTAGTGAGGCTCAGGGAGATTCTGGTTCAAGCAAGAAAGCTTCTTGGAAACCCCACGTCATTCAAATGA 1263 46.32 MHGQGVSSSPGACKGLKVDGEGIKELCSGWKFIILLTHFCFPLCLADLSLFGDEGKHHLWNWGRSSSHAAEKIDRDMEEREPLRSILRRLVRGEDRVKLEATGFSCYSDLHSEVCVTDKPVRINNHTVYVLSDQSSDEFKQSVQPYARKDDEIAMKAFVITDDKPWMVERYKRILKQLSAYNAINPAEDGSVHCFPGAVIGLKYHDNLALNTSDIPGGYSMSDFKHFLRKSYSLKITTASEIEHPKPVLILISRRTTRKFLNEDETVGLMEDLGFQVIITPPYNMSSLDKFAQVVNSCSVMVGAHGAGLANSVLLPAGAVTVQVVPLGLDRASAANYGDPARKIGVQYLEYKIEAEESSLFDLYGRDQPIIADPQSIHLKGYDVARAVYLDGQDMKINLVRLREILVQARKLLGNPTSFK* 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7059266 7061190 - Vvi19g552 Vvi19g552 782051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g552 420 PANTHER GLYCOSYLTRANSFERASE 158 415 IPR007657 GO:0016757
Vvi19g552 420 PANTHER GLYCOSYLTRANSFERASE 77 157 IPR007657 GO:0016757
Vvi19g552 420 Pfam Glycosyltransferase 61 225 320 IPR007657 GO:0016757
Vvi19g552 420 PANTHER EGF DOMAIN-SPECIFIC O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE-LIKE 77 157 - -
Vvi19g552 420 PANTHER EGF DOMAIN-SPECIFIC O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE-LIKE 158 415 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g552 - - - vvi:104877597 497.278
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g552 . . . . . . . . . Cmo06g00897 . . . . . . . . . . . . . . Cla10g00490 Cam10g0480 Cec10g0499 Cco10g0485 Clacu10g0499 Cmu10g1326 Cre10g0731 . . . . . Csa03g00494 . Cme06g02858 . . . . . . . . Sed14g0140 . . . . . . . . Bhi11g00593 Tan01g1728 Cmetu06g2813 . . . . . . . . . . . Lsi05g00579 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013386 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 2 2 1 0 1 1 0 2 2 1 26