Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g557 ATGATCTACCGGTATAGTCGCCACCTTTTGCTTCCTTCCTTCGGAGTTCAAGGGCAGTCGAGTCTCTTGAAGTCTTCAATTTTAGTTGTTGGAGCTGGAGGATTGGGCGCACCAGCTCTTTTATATCTTGCGGCATGTGGAGTTGGGTGCATAGGTACTGTTGATCATGATGTTGTAGAGCTGAATAATCTGCACCGACAGATTATCCACACTGAAGCATATGTTGGTCAACCAAAAGTACAATCTGCTGCTGCTGCTTGTCGTTCGATTAACTCCACAATTCAGATTGTGGAACACAAAGAAGCTTTATGCACATCCAACGCTTTGGAGATTTTGAGCAAATATGATCTAGTTATCGATGCAACAGATAATGTCCCTAGCCGGTACATGATAAGTGATTGCTGCGTTGTATTAGGGAAGCCTCTTGTTTCAGGTGCTGCTTTGGGATTGGAAGGGCAGCTCACTGTTTACAATTACAAAGGAGGTCCATGCTATCGGTGCCTTTTTCCTACTCCACCACCAACAACAGCATGTCAAAGATGTTCAGATAGTGGAGTTTTAGGAGTAGTTCCTGGTATCATTGGCTGTCTCCAAGCCCTAGAGGCTATAAAGATTGCAAGTGCTGTTGGAGAACCACTGTCAGGAAGGATGCTTCTCTTTGATGCATTGTCAGCACGAATTCGAATTGTCAAGATTAGAGGGAGGTTGTCCCAATGTGAAGTTTGTGGAGAAAATGCAACATTCACCCAACAGAAATTTCAAGATTTTGACTATGAGAAGTTCACTCGGTCTCCACTATCCACGACTCCATTGAAGTTAAACCTGCTTCCAGCAGATTCCAGAATAACCAGCAAAGAGTACAATGACAGACTTGTTAATGGGGAGGCACACGTATTGGTGGATGTACGACCATCACACCACTTCAACATTGTTTCTCTCCCGAAGTCATTGAACATCCCACTCTCAAGCTTGGAGACTAGGATGTCGGAAATCAGTTCAGCCTTGAAGGAAGAAGAGGAGCAGAAGGGTAGTAACCATTCTGGTACAAGTATCTACGTAGTGTGTAGAAGAGGTAATGATTCACAGAGAGCTGTTGAATACCTCCACAAAATAGGTTTCACTTCAGCCAAGGACATCATAGGGGGACTGGAGTCATGGGCCCATGATGTGGATCCAAACTTTCCTACGTACTAG 1194 44.47 MIYRYSRHLLLPSFGVQGQSSLLKSSILVVGAGGLGAPALLYLAACGVGCIGTVDHDVVELNNLHRQIIHTEAYVGQPKVQSAAAACRSINSTIQIVEHKEALCTSNALEILSKYDLVIDATDNVPSRYMISDCCVVLGKPLVSGAALGLEGQLTVYNYKGGPCYRCLFPTPPPTTACQRCSDSGVLGVVPGIIGCLQALEAIKIASAVGEPLSGRMLLFDALSARIRIVKIRGRLSQCEVCGENATFTQQKFQDFDYEKFTRSPLSTTPLKLNLLPADSRITSKEYNDRLVNGEAHVLVDVRPSHHFNIVSLPKSLNIPLSSLETRMSEISSALKEEEEQKGSNHSGTSIYVVCRRGNDSQRAVEYLHKIGFTSAKDIIGGLESWAHDVDPNFPTY* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7112181 7119503 + Vvi19g557 Vvi19g557 782056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g557 397 ProSiteProfiles Rhodanese domain profile. 293 395 IPR001763 -
Vvi19g557 397 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 4 364 IPR035985 GO:0008641
Vvi19g557 397 CDD ThiF_MoeB_HesA_family 4 232 - -
Vvi19g557 397 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 2 383 IPR045886 -
Vvi19g557 397 PANTHER ADENYLYLTRANSFERASE AND SULFURTRANSFERASE MOCS3 2 383 - -
Vvi19g557 397 SMART rhod_4 283 392 IPR001763 -
Vvi19g557 397 Hamap Adenylyltransferase and sulfurtransferase MOCS3 [MOCS3]. 1 397 IPR028885 GO:0002143|GO:0004792|GO:0005829
Vvi19g557 397 Gene3D - 1 249 - -
Vvi19g557 397 Coils Coil 321 341 - -
Vvi19g557 397 Gene3D - 280 397 IPR036873 -
Vvi19g557 397 Pfam ThiF family 5 240 IPR000594 -
Vvi19g557 397 Pfam Rhodanese-like domain 285 388 IPR001763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g557 K11996 MOCS3, UBA4; adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11] - vvi:100248765 775.393
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g557 . . . . Bpe09g00160 . . Bma13g01072 Cmo16g00940 . . . . . . . . . . . . . . . Cla10g00489 Cam10g0478 Cec10g0498 Cco10g0484 Clacu10g0497 Cmu10g1324 Cre10g0730 . . . Cone15ag1182 . . . Cme06g02850 . Blo10g00844 . Bda12g00925 . . . . . . . . Cma16g00905 . Car16g00880 Cpe14g00720 . . . . . . . . . . . . . . . Lsi05g00576 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi19g1124 . 59 381 Sulfurtransferasese/Rhodanese AT1G79230 78.6 2.5e-153 538.5
Vvi19g1124 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 74.0 1.7e-115 412.5
Vvi17g389 . 605 884 Sulfurtransferasese/Rhodanese AT5G23060 68.4 2.8e-96 349.0
Vvi15g742 . 1 329 Sulfurtransferasese/Rhodanese AT4G01050 57.9 3.4e-104 375.9
Vvi14g82 . 8 614 Sulfurtransferasese/Rhodanese AT1G09280 66.8 2.5e-236 815.1
Vvi13g182 . 97 446 Sulfurtransferasese/Rhodanese AT2G40760 74.0 5.8e-154 541.2
Vvi17g979 . 11 335 Sulfurtransferasese/Rhodanese AT1G17850 68.5 2.1e-137 486.1
Vvi8g1244 . 1 227 Sulfurtransferasese/Rhodanese AT2G42220 69.9 4.6e-88 321.2
Vvi8g246 . 37 218 Sulfurtransferasese/Rhodanese AT3G08920 67.0 1.2e-71 266.5
Vvi17g860 . 1 287 Sulfurtransferasese/Rhodanese AT4G24750 66.6 1.2e-109 393.3
Vvi6g993 . 17 297 Sulfurtransferasese/Rhodanese AT5G19370 59.6 2.4e-89 325.9
Vvi19g557 . 48 398 Sulfurtransferasese/Rhodanese AT5G55130 73.7 2.2e-153 538.9
Vvi16g997 . 50 228 Sulfurtransferasese/Rhodanese AT4G27700 81.0 1.5e-80 296.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009966 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 31