Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g558 ATGGCTACACTTTTCTATGAGCCATCTACTAGAACTAGGCTCTCTTTTGAGTCTGCCATGAAAAGGTTGGGTGGGGAAGTTTTAACAACAGAAAATGCACGGGAATTCTCATCAGCAGCAAAAGGAGAGACACTTGAAGATACTATAAGAACTGTTGAAGGATACTCAGACATAATTGTAATGAGGCACTTTGAAAGTGGTGCTGCCAGAAGAGCCGCAGTCACAGCTGAGATTCCTATCATTAATGCAGGGGATGGTCCTGGACAGCATCCAACCCAGGCTCTTTTGGATGTATATACTATTGAAAGAGAGATAGGAAGACTGGATAGAATCAAAGTCGGGCTTGTTGGAGATCTTGCAAATGGAAGAACAGTCCGGTCACTTGCATATTTGCTTGCCAAGTATCAAGATGTGAAGATCTACTTTGTTTCTCCTGAAGTGGTCAAAATGAAGGATGATATAAAAGACTATCTCACATCAAAGGGAGTTGAATGGGAAGAAAGTGCTGACTTAATGGAAGTAGCTTCAAAGTGTGATGTGGTGTATCAAACTCGCATTCAGCGAGAAAGATTTGGAGAAAGGGCCGATCTCTATGAAGAAGCTCGAGGCAAGTACATTGTGGATCGAGATGTGTTAGGTGTGATGCAGAAGCATGCTGTAGTCATGCATCCCCTCCCAAGGCTTGACGAGATAACTGTGGATGTTGATGAGGATCAAAGGGCTGCCTATTTCAGACAAGCAAAGAATGGTCTCTATATTCGGATGGCTTTGTTGAAGCTCCTACTTGTTGGTTGGTGA 798 43.23 MATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFESGAARRAAVTAEIPIINAGDGPGQHPTQALLDVYTIEREIGRLDRIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPEVVKMKDDIKDYLTSKGVEWEESADLMEVASKCDVVYQTRIQRERFGERADLYEEARGKYIVDRDVLGVMQKHAVVMHPLPRLDEITVDVDEDQRAAYFRQAKNGLYIRMALLKLLLVGW* 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7121823 7124124 - Vvi19g558 Vvi19g558 782057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g558 265 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 1 102 IPR006132 GO:0006520|GO:0016743
Vvi19g558 265 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 111 260 IPR006131 GO:0006520|GO:0016597|GO:0016743
Vvi19g558 265 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 5 24 IPR006130 GO:0006520|GO:0016597|GO:0016743
Vvi19g558 265 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 90 101 IPR006130 GO:0006520|GO:0016597|GO:0016743
Vvi19g558 265 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 217 226 IPR006130 GO:0006520|GO:0016597|GO:0016743
Vvi19g558 265 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 227 250 IPR006130 GO:0006520|GO:0016597|GO:0016743
Vvi19g558 265 PRINTS Aspartate carbamoyltransferase signature 35 44 - -
Vvi19g558 265 PRINTS Aspartate carbamoyltransferase signature 89 106 - -
Vvi19g558 265 PRINTS Aspartate carbamoyltransferase signature 181 190 - -
Vvi19g558 265 PRINTS Aspartate carbamoyltransferase signature 221 226 - -
Vvi19g558 265 PRINTS Aspartate carbamoyltransferase signature 243 257 - -
Vvi19g558 265 PANTHER ASPARTATE CARBAMOYLTRANSFERASE, CATALYTIC CHAIN 1 265 - -
Vvi19g558 265 TIGRFAM asp_carb_tr: aspartate carbamoyltransferase 2 262 IPR002082 GO:0004070|GO:0006207
Vvi19g558 265 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 5 12 IPR006130 GO:0006520|GO:0016597|GO:0016743
Vvi19g558 265 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 1 262 IPR036901 GO:0006520|GO:0016597|GO:0016743
Vvi19g558 265 Gene3D Aspartate/ornithine carbamoyltransferase 90 249 IPR036901 GO:0006520|GO:0016597|GO:0016743
Vvi19g558 265 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 1 265 - -
Vvi19g558 265 Gene3D Aspartate/ornithine carbamoyltransferase 1 258 IPR036901 GO:0006520|GO:0016597|GO:0016743
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g558 K00609 pyrB, PYR2; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] - vvi:100246977 520.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g558 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00492 . . . . . . . . . . Sed01g2981 . . . . . . Cpe14g00722 . Bhi11g00591 Tan01g1733 Cmetu06g0270 . . . . . . . . . . . . . Chy06g01834 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006067 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 2 1 1 0 1 3 1 1 1 2 0 2 6 1 37