Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g564 ATGAAAAAAAAGAGGAAAAAACATAAAAAAATTTGTGAAGAAGATGAGAGGAGAGAGGGAGGGGTGTTGTGCTGGTGGTGCTTGTGCTCGCCATTTTGTTACGTTATAAGTTCCAAACCCTCGAGCCCTCTCTCTTTTCTCCATCACAGAACAAGCAATATGCGGAGAGGGAGGGCGGCTCCGACGGCTACACTGGCAACGTCGGCGGCAGGGGGGGCCGGTGGATCTGGGTTCGTCAAAGATATGAGGTATCGGGGTGTGAGGAAGAGGCCATGGGGGAGGTTTGCGGCAGAGATAAGAGACCCGTGGAAGAAGACAAGGGTTTGGTTGGGGACGTTCGACTCGCCGGAGGAGGCGGCAAGGGCGTACGACGCGGCTGCGAGGACTCTCCGGGGGCCCAAGGCAAAAACAAACTTTCCGGCGGTGTCGGGGGCGGCGGTGGCGTTTCAGGAGCAGCAGATTCACGCCCAGAGGCCGACGTCGAGTGGCATGAGCAGCACCGTGGAGTCCTTTAGCGGCCCTCGCCCAGCTCCGGCAAATCTACCTCCGGCGACGTTGCGCCGGCACCCACGTAGCCCTCCGCTTCTACCCGACGATTGCCACAGTGACTGCGACTCGTCGTCCTCGGTGATCGACAACGGAGACATCGCTGCTGCAACTTCAGTTCGAAAACCCCTCCCTTTCGATCTCAATGTTATGCCGTCCGACGATGACGAGCTCATCATGGGTGATCTCCACAGCACGGCTTTGCGTCTCTGA 759 57.97 MKKKRKKHKKICEEDERREGGVLCWWCLCSPFCYVISSKPSSPLSFLHHRTSNMRRGRAAPTATLATSAAGGAGGSGFVKDMRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSPEEAARAYDAAARTLRGPKAKTNFPAVSGAAVAFQEQQIHAQRPTSSGMSSTVESFSGPRPAPANLPPATLRRHPRSPPLLPDDCHSDCDSSSSVIDNGDIAAATSVRKPLPFDLNVMPSDDDELIMGDLHSTALRL* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7169434 7170792 + Vvi19g564 Vvi19g564 782063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g564 252 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Vvi19g564 252 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Vvi19g564 252 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Vvi19g564 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 147 232 - -
Vvi19g564 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 54 143 - -
Vvi19g564 252 SUPERFAMILY DNA-binding domain 83 140 IPR016177 GO:0003677
Vvi19g564 252 MobiDBLite consensus disorder prediction 157 207 - -
Vvi19g564 252 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Vvi19g564 252 MobiDBLite consensus disorder prediction 176 190 - -
Vvi19g564 252 Gene3D AP2/ERF domain 82 142 IPR036955 GO:0003700|GO:0006355
Vvi19g564 252 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Vvi19g564 252 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 54 143 - -
Vvi19g564 252 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 147 232 - -
Vvi19g564 252 MobiDBLite consensus disorder prediction 157 173 - -
Vvi19g564 252 CDD AP2 83 142 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g447 Vvi19g564 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14427 PF00847 AP2 3.30E-15 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g564 K09286 - vvi:100264172 338.191