Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g568 ATGGCTTGGCTCTTCTTAGCTCAGCTCCTGATCCAAATCCTAAGGATCCATGCAAAAGTTCCAGCCATTATTGTTTTTGGGGACTCCTCTGTGGACTCAGGGAACAACAACCAGGTACAAACAATTCTAAAGAGCAATTTTGAGCCTTATGGGCGTGATTTCAATGGTGGCCAACCCACTGGACGGTTTTCTAATGGTCGGCTTCCACCAGACTTCATTTCTGAGGCTTTTGGGGTCAAGCCAGTGGTACCTGCTTACTTGGATCCCACTTATCATATTACAGATTTTGCCACTGGAGTTTGCTTTGCTTCTGCTGGAACTGGTTATGATAATGCTACCTCCAACGTGCTGTCAGTGATACCTTTCTGGAAGGAACTTGAATACTACAAGGAATACCAGAAGCAGCTCAGAGATTATCTTGGCCATCAGAAAGCTAATGAGGTTCTGAGTGAATCACTGTATTTAATAAGCTTAGGAACCAATGATTTCTTAGAAAACTACTACCTACTTCCAGGCAGGCGGTTAAAGTTCTCTGTTGAGGAGTACCAGAGTTTTCTTGTAGGGATTGCTGGAAATTTCATTACAGAGCTCTTCCAATTAGGAGCTAGAAAGATCTCACTGGGTGGTCTTCCTCCTATGGGTTGTTTGCCACTGGAAAGAACCACAAATATTTTATCTGGGAGGGATTGTGTGGAGAAGTACAATATTGTGGCCTGGGATTTCAATGGGAAGTTGCAAGAACTGGTTATGAAGCTGAAAAATGAGCTTTCTGGAATCAGATTGGTGCTAACAAACCCATTTGATATTCTCTTGGAGATTATTCAGAGTCCACACTCTTTTGGATTCGAGGAAGCAGCAGTAGCATGTTGCGCAACTGGAGTGGTTGAAATGGGGTACATGTGTAATAAATTTAACCCACTCACATGTGCAGATGCGGATAAATATGTATTTTGGGATGCTTTCCACCCAACGGAGAAAACCAACAGGATTATTGCTGATCATGTGGTTAAGCATTCCCTAGCAGAGTTCATATGA 1035 42.9 MAWLFLAQLLIQILRIHAKVPAIIVFGDSSVDSGNNNQVQTILKSNFEPYGRDFNGGQPTGRFSNGRLPPDFISEAFGVKPVVPAYLDPTYHITDFATGVCFASAGTGYDNATSNVLSVIPFWKELEYYKEYQKQLRDYLGHQKANEVLSESLYLISLGTNDFLENYYLLPGRRLKFSVEEYQSFLVGIAGNFITELFQLGARKISLGGLPPMGCLPLERTTNILSGRDCVEKYNIVAWDFNGKLQELVMKLKNELSGIRLVLTNPFDILLEIIQSPHSFGFEEAAVACCATGVVEMGYMCNKFNPLTCADADKYVFWDAFHPTEKTNRIIADHVVKHSLAEFI* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7223202 7225703 - Vvi19g568 Vvi19g568 782067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g568 344 PANTHER ANTER-SPECIFIC PROLINE-RICH PROTEIN APG-LIKE 4 343 - -
Vvi19g568 344 SUPERFAMILY SGNH hydrolase 23 337 - -
Vvi19g568 344 CDD SGNH_plant_lipase_like 21 335 IPR035669 -
Vvi19g568 344 Pfam GDSL-like Lipase/Acylhydrolase 23 335 IPR001087 GO:0016788
Vvi19g568 344 PANTHER GDSL ESTERASE/LIPASE EXL3 4 343 - -
Vvi19g568 344 Gene3D SGNH hydrolase 12 340 IPR036514 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g568 - - - vvi:100260574 697.967
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g568 . . . . . . Bma10g00574 . . . Cma01g01115 . Car01g00985 . . . Cpe02g00788 Bhi09g01691 Tan01g3119 . . Hepe01g1251 Mch11g1212 . . . . . . . . . . Cone14ag1177 Cone15ag1190 Lsi02g01883 . . . Blo07g00885 . Bda05g00700 . . . . . . Cmo01g01161 . . . . . . . . . . . . . . Cla09g01031 Cam09g1086 Cec09g1085 Cco09g1106 . . Cre09g1051 . . Chy01g01052 Cme01g01002
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000811 2 3 2 3 2 3 3 3 3 3 2 3 4 3 3 4 3 6 3 3 3 3 3 3 3 4 3 3 3 2 91