Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g57 ATGTCTATATTGCGAACTTCAACATACGTGAGCTTCAACAAATTAAGTGGAAAAATTCTAGACAGTTATCTTGGTATATCAAAAATAGACTACATGTATTTGACTGGAAACTTGCTAACTGGACGCATACCCGATTGGATTCTGCAGAAAGGAGAAAACATTGATCTTTCCTACAACAACTTTACGAGTGGAAACTCAGAAGACTGTCAGACTCGGAGTGTGAACTTGTTTGGAAGCTCTTCAGGGAGCAATAACTCTGGAATCGTTTCATGCTTGAGAGGCTTCCCTTGTCCAAAAAATCATTACTCAGTCCATATCAACTGTGGTGGAAAGGAAGTAATTGTTGACAACACAACATACGAAGATGATACATATTCACCTGGAGCTTCCACATATCACAAAAGTGAAACTAACTGGGCGTTTAGCAGCACTGGTTACTTCATGGATGATAGTATTAATACAGACTCCTATATTGCAAACAATAAGTCTATACTCTTGATGAATAATTCTGCACTGTACATGAATGCGCGTCTTTCTGCCCTCTCTCTCACTTATTATGCATTCTGTCTGGGAAACGGAAACTACACGGTAAAACTCCAATTTGCGGAGATTATGTTTACTGACGACAAAACGTATAGCAGCCTTGGAAGGCGCATATTCGATGTTTACATTCAGGGCAACCAGGTTCTGAAGGATTTCAATATTGAGGATGAAGCAGGAGGGGCTGGCCAAGAAATCATAAAAAATTTTACTATAGCCGTGACTAGCAGAACATTGGAGATCCGCTTCTATTGGGCTGGGAAGGGGACGACTGCCATTCCTAGTAGAGGGGTTTATGGTCCTCTTATATCTGCTATTGCTGTGACCCCCAATTTTGTACCTCCCGCAGAAAGTGGAAGTAGTATATCTGCAGGTGCTGTGGTTGGTATTGTGGCTGCAGTAGCACTTCTTCTGCTTCTGGTTCTAGGCGTCCTTTGGTGGAAAGGCTGTCTAAGACATAAAAATACAATGGAACAAGATTTAAGGGGCCTAAATCTGCAAACTGGTACATTTACCTTACGGCAAATTAAGGCTGCCACAAACAACTTTGATGCTGCTAATAAGATTGGAGAAGGTGGTTTTGGTTCTGTCTATAAGGGCCTATTATTGGATGGCACAATAATTGCAGTGAAGCAGCTTTCTTCCAAATCAAAACAAGGAAATCGTGAGTTTGTGAATGAAATAGGCATGATTTCTGCTCTACAACATCCGCATCTTGTAAAGCTGTATGGCTGTTGTATCGAAGGAAATCAGTTATTGCTAGTATATGAGTACATGGAAAACAACAGCCTTGCTCGGGCATTGTTTGGCCCAAAAGATAGCCAATTGAAACTGGATTGGCCAACAAGACACAAGATTTGTGTTGGTATAGCAAGGGGTTTGGCTTATCTACATGAAGAATCGAGGCTGAAGATTGTTCACAGAGACATAAAGGCAACAAATGTGCTGCTTGACAAGGACCTTAACCCCAAAATATCCGACTTTGGCTTGGCCAAACTTGATGAAGAAGAGAATACCCACATTAGCACCCGGATCGCTGGAACTTTTGGATATATGGCACCTGAATATGCAATGAGGGGGCATTTAACTGAAAAGGCAGATGTTTATAGTTTTGGAGTCGTCGCTTTGGAAATCGTTAGTGGGAAGAGCAACACTAATCACATTCTAAAGGATGGCTGCGTGTATCTTCTCGATTGGGCACTCTTGTTAAAAGAGAACGGCAATCTGTTGGAGCTAGTTGACCCAATACTGGAATCAAATTTCAAAAAGGAAGAGGTTATGGCGATGATCAACGTAGCTCTTCTATGCACCAGCTTCTCTCCAGTAGCTAGGCCGACCATGTCATCAGTAGTGAGCATACTTGAAGGCAGAGCTCATGTTCAGGAAATCTCTTCGGGTTTAAGCATCTCCAGTGATGAGATTAAGCTCAAGGAACTGCGGCAACAGTATGATCTCTACCATGCAAAGAACACCAGTGAGGGCCAAATTCCATGTTTGTCAACAGATGGGCCATGGACCGCCTCTTCCACCTCTGGTGCGGATCTCTACCCCATCACCATGAATTCTCAGTACTGGGAGAATAGAGATCAGTAA 2133 42.48 MSILRTSTYVSFNKLSGKILDSYLGISKIDYMYLTGNLLTGRIPDWILQKGENIDLSYNNFTSGNSEDCQTRSVNLFGSSSGSNNSGIVSCLRGFPCPKNHYSVHINCGGKEVIVDNTTYEDDTYSPGASTYHKSETNWAFSSTGYFMDDSINTDSYIANNKSILLMNNSALYMNARLSALSLTYYAFCLGNGNYTVKLQFAEIMFTDDKTYSSLGRRIFDVYIQGNQVLKDFNIEDEAGGAGQEIIKNFTIAVTSRTLEIRFYWAGKGTTAIPSRGVYGPLISAIAVTPNFVPPAESGSSISAGAVVGIVAAVALLLLLVLGVLWWKGCLRHKNTMEQDLRGLNLQTGTFTLRQIKAATNNFDAANKIGEGGFGSVYKGLLLDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLVYEYMENNSLARALFGPKDSQLKLDWPTRHKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTFGYMAPEYAMRGHLTEKADVYSFGVVALEIVSGKSNTNHILKDGCVYLLDWALLLKENGNLLELVDPILESNFKKEEVMAMINVALLCTSFSPVARPTMSSVVSILEGRAHVQEISSGLSISSDEIKLKELRQQYDLYHAKNTSEGQIPCLSTDGPWTASSTSGADLYPITMNSQYWENRDQ* 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 621202 638780 - Vvi19g57 Vvi19g57 781556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g57 710 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 82 671 - -
Vvi19g57 710 Gene3D Phosphorylase Kinase; domain 1 328 438 - -
Vvi19g57 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
Vvi19g57 710 Pfam Malectin domain 103 286 IPR021720 -
Vvi19g57 710 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Vvi19g57 710 Gene3D Transferase(Phosphotransferase) domain 1 439 648 - -
Vvi19g57 710 Gene3D Ribonuclease Inhibitor 5 96 IPR032675 -
Vvi19g57 710 SUPERFAMILY L domain-like 10 64 - -
Vvi19g57 710 SMART serkin_6 363 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g57 710 Pfam Protein tyrosine and serine/threonine kinase 366 633 IPR001245 GO:0004672|GO:0006468
Vvi19g57 710 Gene3D - 99 291 - -
Vvi19g57 710 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 82 671 - -
Vvi19g57 710 SUPERFAMILY Protein kinase-like (PK-like) 348 635 IPR011009 -
Vvi19g57 710 ProSiteProfiles Protein kinase domain profile. 363 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g57 710 CDD STKc_IRAK 369 636 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76468 PF07714 PK_Tyr_Ser-Thr 9.10E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g57 - - vvi:100250462 1358.97