Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g573 ATGGAGCTCTACTTCTCCACAACGCTCCTCAAATTCAGACCACCTCTCTCTCTCCTCTCTCCCATCACCTCTCTCTCCCTTACAACCCCTCTTCTCCTTCAACCCAAAAAAAATCCCTCCAATCTTCACACACTCTCTTATTCTCGCCAATTCTTTCATCCCCAACACCCATCTCACAGAAATTCAATCCATTTCACAGCTTTTTCATCTCCTGCTTCCGTAGCTTCCGCAAAAGACCGCTTACCGGCTGATGTTGAGGTCACTGAAACTGAAGAACCCAATTCAAGAGTTAGGTTGAGTGTAGAAGTTCCGGCAGTTGTTTGTGAGGATTGTTACCAAAGGGTCATACGTGAATTTACAAAGCTGGCAAAGATCCCTGGATTTCGCCCTGGGAAGAAAGTTCCAGAGACTGTTCTTATAAATCATATTGGGAAGAAAAATGTTCAAAAGGCTACAATTGAATCTATATTGAAGAGGACCTTTCCACATGCCATGTCTTCGGTGGCTGGGAGGGCTCTGAATGACTCCATCCGCATTGTAACCAAATTTTCTGATATGGAAGAAACCTATTCTTCACAAAAATTTCTGAGATATGATATCATTGTTGATGTGGCACCTGAAGTCAAATGGGTTCCTGAAAATGGATACAAGAACTTGAAGATTGTTGTTGAGATAGACAGTGACATAGATGCTCAGAGAGCTTCTGAACAAGAGTTAAAACGTCGTTACAAGTCTCTCGGTTTGCTGAGAATTATAACTGACAGGGGACTACAGATTGGTGATGTTGTTGTCCTTGATATATCAGCAACAACAATAGACCAAGATGAATCAAATGTTCAGAAAATTCCATCTGCAGAGAGTAAAGGTTTTCACTTTGATACAGAAGATGGTGATAAAGTCCTTCCAGGCTTCCTTGACTCAATAATTGGCATTCGACAAGGTGAAACAAAGTCCTTTCCACTAGTATTTCCTGAATCATGGAGACAAGAAAATCTCCGTGGTGTTCATGCTCAGTTTACTGTTGAATGCAAGGAATTATTTTATAGAGAGTTACCTGAATTAAACGACTCCCTTGCTGAGAAGCTTCTTCCTGGATGCACCACCTTGGAGCAGGTCAAGGAATCATTGTTGCAAAGATGCCTAGAGGTGGAGCAAACAGCTAAAGAACAAGCAACAGATAACGCAATTCTAGACCAGCTTCACAAGATGATTGAAGTAGATATTCCTCAATCCTTGTTTGAGGAACAGGGCAGGCAGCTCTATGGAGCCCAGCTTTTACAGATACAGGCAAATATGAAGCTTAATGAACAGCAGTTGGCATCTCTATCAAGTCCGAAGGCCGTGAATGAATACCTGGAAAGCCAGAAGGAGAATATAACAAGTGTGATCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAGTTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTCAAACGTCATAAACAAGAATACGATGAAGAGCGTATTAGAGAACAGGTTCAAGAGGTGCTGGAAGGGGCAAAGGTCCTTGAATGGTTAAAAGAACATGCAGAGATTGAGTACAAAACCAGGTGA 1611 41.9 MELYFSTTLLKFRPPLSLLSPITSLSLTTPLLLQPKKNPSNLHTLSYSRQFFHPQHPSHRNSIHFTAFSSPASVASAKDRLPADVEVTETEEPNSRVRLSVEVPAVVCEDCYQRVIREFTKLAKIPGFRPGKKVPETVLINHIGKKNVQKATIESILKRTFPHAMSSVAGRALNDSIRIVTKFSDMEETYSSQKFLRYDIIVDVAPEVKWVPENGYKNLKIVVEIDSDIDAQRASEQELKRRYKSLGLLRIITDRGLQIGDVVVLDISATTIDQDESNVQKIPSAESKGFHFDTEDGDKVLPGFLDSIIGIRQGETKSFPLVFPESWRQENLRGVHAQFTVECKELFYRELPELNDSLAEKLLPGCTTLEQVKESLLQRCLEVEQTAKEQATDNAILDQLHKMIEVDIPQSLFEEQGRQLYGAQLLQIQANMKLNEQQLASLSSPKAVNEYLESQKENITSVIKQNLAVGDIFRRENLQFPTEELVKEVENSISEFKRHKQEYDEERIREQVQEVLEGAKVLEWLKEHAEIEYKTR* 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7248620 7255469 + Vvi19g573 Vvi19g573 782072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g573 536 Pfam Bacterial trigger factor protein (TF) C-terminus 368 527 IPR008880 GO:0006457|GO:0015031
Vvi19g573 536 Pfam Bacterial trigger factor protein (TF) 86 225 IPR008881 GO:0006457|GO:0015031
Vvi19g573 536 Gene3D - 215 531 IPR037041 GO:0006457|GO:0015031
Vvi19g573 536 PANTHER TRIGGER FACTOR-LIKE PROTEIN TIG, CHLOROPLASTIC 74 535 - -
Vvi19g573 536 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 74 535 IPR005215 GO:0015031
Vvi19g573 536 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 354 535 IPR027304 -
Vvi19g573 536 Gene3D - 245 352 IPR046357 GO:0003755
Vvi19g573 536 Hamap Trigger factor [tig]. 85 536 IPR005215 GO:0015031
Vvi19g573 536 TIGRFAM tig: trigger factor 96 525 IPR005215 GO:0015031
Vvi19g573 536 Coils Coil 486 506 - -
Vvi19g573 536 Gene3D - 83 208 IPR036611 GO:0006457|GO:0015031
Vvi19g573 536 SUPERFAMILY Trigger factor ribosome-binding domain 86 224 IPR036611 GO:0006457|GO:0015031
Vvi19g573 536 SUPERFAMILY FKBP-like 254 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g573 K03545 tig; trigger factor - vvi:100243475 1019.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g573 . . . . . . Bma10g00578 . . Cmo06g00892 . . . . . . . . . . . . . . Cla10g00479 Cam10g0466 Cec10g0486 Cco10g0474 Clacu10g0486 Cmu10g1314 Cre10g0718 . . . Cone15ag1194 . Csa03g00480 . Cme06g02841 . . Bda05g00697 . . Bpe03g00772 . . Sed08g2980 . . . . . . . . Bhi11g00581 Tan01g1746 Cmetu06g1014 . Hepe06g0018 . . . . . . . . . Lsi05g00567 . Chy06g01842 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011555 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 30