Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g575 ATGGCAGTGGCAGATGCTGAAATTCCTCTCCTTGGAGAAACTACTTGTGGTTCATTGCTGCAGAAATTGCAGCAAATCTGGGATGAGGTTGGTGAAAGCGATGAGGAACGTGATAAAATGCTCCTTCAGTTAGAGCAAGAGTGCTTGGACGTTTATAAGAGGAAGGTTGATCAGGCTGTGAAATCGAGAGCACACCTTCTTCAGGCCTTGGCAGATGCCCAACTTGAACTCTCCCGTCTTCTATCAGCACTTGGAGAGAAAAGTTTTGTTGGAATTCCTGATAAAACTTCTGGCACAATCAAGGAACAGCTTGCAGCTATAGCACCGACGCTCGAACAGCTGTGGAAACAGAAAGAAGAGAGAGTGAAGGAGTTTTCTGATGTACAGACACAGATTCAAAAGATATGTGGAGAAATTGCTGGGAACTCAAATCTTAGTGAGGTTCCTGTGGTTGATGAGGCTGACCTATCCTTGAAGAAGCTGGATGAATTTCAGGGCCAACTCCAAGAACTCCAGAAAGAAAAGAGTGACAGGTTGCACAAGGTCCTTGAGTTTGTGAGCACTGTTCATGATCTATGTGCTGTCCTTGGGATGGACTTCTTTAATACTGTTACTGAAGTTCATCCTAGCTTAAATGACTCAACTGGTGTGCAATCCAAAAGCATTAGCAATGACACCCTTTCTAGGCTGGCTAAGACAGTCTTAGCACTAAAGGAAGACAAGAAGCAGAGGCTACAGAAGCTTCAAGAGTTAGCCACTCAGCTAATTGATCTGTGGAATCTGATGGATACCCCAGAGGAGGAGCGGAGTTTGTTTGATCATGTTACCTGTAACATATCTGCTTCAGTTGATGAAGTGACCATCCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGGCTGAGGTGGAAGTTGAAAGGCTTGATCAACTGAAAGCCAGCAGGATGAAGGAAATTGCTTTCAAGAGGCAAGCTGAGCTCGAAGAGATATTTGCCCGTGCTCACATAGAAATAGATCCAGAGGCTGCTCGAGCAAAGATTATGTCACTTATTGATTCTGGGGATGTTGAGCCTTCTGAGTTACTGGCCGATATGGACAATCAAATAACAAAAGCAAAGGAAGAGGCTTTCAGCAGAAAGGATATATTAGACAAGGTTGAGAAATGGATGTCAGCTTGTGAAGAAGAGAGTTGGCTTGAAGACTACAATCGGGATGAAAACAGGTATAACTCAAGCAGAGGTGCACACTTAAATCTCAAGCGTGCTGAAAAAGCTCGGATTTTAGTCAACAAAATTCCAGCTCTTGTTGACACATTGGTTGCCCAAAACTGGGGCATGGGAAGAAGATCATGGTATACCATTTACTTACGACGGTGTTCCTCTCCTTGCCATGCTAGATGA 1398 44.42 MAVADAEIPLLGETTCGSLLQKLQQIWDEVGESDEERDKMLLQLEQECLDVYKRKVDQAVKSRAHLLQALADAQLELSRLLSALGEKSFVGIPDKTSGTIKEQLAAIAPTLEQLWKQKEERVKEFSDVQTQIQKICGEIAGNSNLSEVPVVDEADLSLKKLDEFQGQLQELQKEKSDRLHKVLEFVSTVHDLCAVLGMDFFNTVTEVHPSLNDSTGVQSKSISNDTLSRLAKTVLALKEDKKQRLQKLQELATQLIDLWNLMDTPEEERSLFDHVTCNISASVDEVTIPGALALDLIEQAEVEVERLDQLKASRMKEIAFKRQAELEEIFARAHIEIDPEAARAKIMSLIDSGDVEPSELLADMDNQITKAKEEAFSRKDILDKVEKWMSACEEESWLEDYNRDENRYNSSRGAHLNLKRAEKARILVNKIPALVDTLVAQNWGMGRRSWYTIYLRRCSSPCHAR* 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7288187 7292433 + Vvi19g575 Vvi19g575 782074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g575 465 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 6 442 IPR007145 GO:0000226|GO:0008017
Vvi19g575 465 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 440 - -
Vvi19g575 465 PANTHER MICROTUBULE-ASSOCIATED PROTEIN, MAP65/ASE1/PRC1-RELATED 6 442 - -
Vvi19g575 465 Coils Coil 297 317 - -
Vvi19g575 465 Coils Coil 231 258 - -
Vvi19g575 465 Gene3D - 152 208 - -
Vvi19g575 465 Coils Coil 154 181 - -
Vvi19g575 465 Gene3D - 368 443 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g575 K16732 PRC1, ASE1, MAP65; Ase1/PRC1/MAP65 family protein - vvi:100267550 845.499
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g575 . . Bda07g00378 Bda09g00408 Bpe09g00151 Bpe08g01113 . Bma13g01085 . Cmo06g00891 . . . . . . . . . . . . . . Cla10g00472 Cam10g0460 Cec10g0481 Cco10g0469 Clacu10g0479 Cmu10g1308 Cre10g0713 . Cone9ag0051 Cone14ag1180 Cone15ag1195 . Csa03g00474 . Cme06g02836 Blo07g00883 . . . . . Bma07g01285 Bma14g00324 Sed08g2977 . . . . . . . . Bhi11g00574 Tan01g1748 Cmetu06g2464 . . . . . . . . . . . Lsi05g00562 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003979 3 1 2 4 2 1 2 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 3 2 1 44