Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g583 ATGGCTTCTTCAGACTCGTGGATGAAAGAATATAATGATGCAGTTAAACTTGCTGATGATATCAATGGAATGATTTCTGAAAGGATTTCATTTTCTGCACCGGGAGTTGATGCCCAACGTCATGCATCTGCGATCCGAAGAAAGATTACAATATTAGGGACTAGACTTGACAGCTTACAGTCCCTTTTGTCAAAGCTTCCTGGAAAGCAGCCCTTAACTGAGAAAGAGATGAATCGACGCAAAGACATGGTTGCAAATTTGAAATCAAAAGCAAACCAGATGGCATCAACATTGAACATGTCAAACTTTGCAAACAGAGACAGCTTGCTTGGCCCAGAGATAAAGCCTGCTGATGCCATGAACAGAACAACAGGTTTGGACAACTATGGCCTTGTGGGCCTTCAGCGGCAAATTATGAAAGAACAAGATGAGGGACTTGAGAAATTGGAAGAGACAGTATATAGTACAAAACATATTGCATTGGCAGTCAACGAAGAGCTTGACCTACATACTAGACTTATTGATAACTTGGACCAACATGTGGATATTACAGACTCTCGTCTAAAGCGAGTGCAGAAGAATCTGGCAATTTTGAACAAGCGCACCAAGGGTGGCTGCTCCTGCCTGTGCCTGCTCTTATCAGTTGTTGGCATTGTGATTCTGATTGTTGCGATATGGTTGCTGGTTAAATACTTGTGA 699 42.2 MASSDSWMKEYNDAVKLADDINGMISERISFSAPGVDAQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPLTEKEMNRRKDMVANLKSKANQMASTLNMSNFANRDSLLGPEIKPADAMNRTTGLDNYGLVGLQRQIMKEQDEGLEKLEETVYSTKHIALAVNEELDLHTRLIDNLDQHVDITDSRLKRVQKNLAILNKRTKGGCSCLCLLLSVVGIVILIVAIWLLVKYL* 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7372208 7376801 + Vvi19g583 Vvi19g583 782082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g583 232 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 136 198 IPR000727 -
Vvi19g583 232 Pfam SNARE domain 173 223 IPR000727 -
Vvi19g583 232 PANTHER SYNTAXIN 2 227 IPR045242 -
Vvi19g583 232 SUPERFAMILY SNARE fusion complex 127 197 - -
Vvi19g583 232 PANTHER SYNTAXIN-51-LIKE 2 227 - -
Vvi19g583 232 SMART tSNARE_6 131 198 IPR000727 -
Vvi19g583 232 CDD SNARE_Qc 139 196 - -
Vvi19g583 232 Gene3D - 138 200 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g583 K08503 - vvi:100250369 412.535