Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g584 ATGAGCATAGTGCCCAAAGAGACAATTGAGGTCATTGCACAAAGTATAGGAATTTCAAATTTCTCGCCCGATGTTGCTCCGGCTCTTGCAACCGATGTTGAGTACCGGGTGCGCGAAATCATGCAGGAGGCAATCAAATGCATGCGCCACTCAAAGAGGACTATCTTGACAGTAAATGATGTGGATAGTGCACTCAAGCTAAGAAATGTGGAGCCACTTTATGGCTTCACCTCTGGAGGTCCTAGGCAGTTTAAAAGAGCTGCTGGACATAAAGATTTGTTCTATGTTGATGACAAGGATGTAGAATTTAAAGACTTGATTGAAGCACCCTTACCAAAAACACCTCTAGATACTGGAGTTATCACTCACTGGCTAGCTATTGAAGGAGTGCAACCTGCAATTTCTGAAAATGCTCCAATTGAAGCACTTGCTGTGCCTTCTGACAACAAAAAATCTGAATACAAAGAGGATGGGCTTCCTGTGGACACCAAATTACCTGTTAAGCATGTACTTTCAAGGGAGCTTCAGCTTTACTTTGACAAAATCAAAGAGCTTACCCTGAGTAGATCTGATTCTATCCTATTTAAAGAAGCATTAGTGAGCTTGGCAACAGACTCAGGAATTCATCCTTTAGTTCCTTATTTTACATATTTCATTGCTGATGAGGTCACACGGAATTTGAATGATTTCTCTATCCTGTTTGCTTTGATGCGTGTTGCCCGTAGCCTTCTCCAAAACCAGCAAATACACATAGAACCTTATCTACACCAATTGATGCCATCTATTATTACTTGCCTTGTTGCGAAAAGGTTGGGGAGTAGATTCTCTGACAACCACTGGGAGCTTAGAAGCTTCACAGCTAACCTGGTCGCTTCAGTATGCAAGAGATATGGGCATGTTTATCATAACCTCCAGCCACGTGTGACAAGGACTCTGCTCCATGCTTTCTTGGACCCAACAAAAGCATTGCCTCAACATTATGGGGCAATTCAGGGGTTGGCAGCATTTGGACCCAGTGTGGTTCGCTTGCTTATACTGCCTAATCTTGAGCCATACTTGCGACTTCTTGAGCCAGAAATGCAGCTTGAGAAGCAAAAGAATGGGATGAAGAGACATGAAGCCTGGCGTGTATATGGAGCCTTACTGTGTGCTGCTGGTACATGCATGTATGATCGGCTGAAGACATTCCCCAATTTGCTATCTCCGCCAACACGGGCCATCTTGAAGAGCAATAAAAAAATCTTGCCTACAAAACCAAAAATCAATCCAGGCAAACGCAAAGCAAGCACAGATAACTTAATGCAACAGCCACCGCTCAAGAAATTAGCAACAGATGGCTCAATGGGCGTTATGCCAATTAACTCCCTGGCAGTTGACAAGCAAGGGTTAACAGGAGGATTTTCTACTTCAACTGCTGTAGGAAGTTCTGATGTTGGTCTGTCATCAATGTCCCAGCAGTTAGCTAGTGAGAACATATCAGGAGGTAGAAGAGAGGTCGGTACTCGAGCCCTAAAAGCATCAGCTGTTCTTGCTCAGGCTTGGAAGGATGTCAATGCTGGGCAATTGTCGGCGTCATTGTTTGAATATTTTGGTGAAAGTATGTTTTGCTTCACTCCCTCACCTGAGTTGTCCCTGTTCTTGTAA 1644 43.86 MSIVPKETIEVIAQSIGISNFSPDVAPALATDVEYRVREIMQEAIKCMRHSKRTILTVNDVDSALKLRNVEPLYGFTSGGPRQFKRAAGHKDLFYVDDKDVEFKDLIEAPLPKTPLDTGVITHWLAIEGVQPAISENAPIEALAVPSDNKKSEYKEDGLPVDTKLPVKHVLSRELQLYFDKIKELTLSRSDSILFKEALVSLATDSGIHPLVPYFTYFIADEVTRNLNDFSILFALMRVARSLLQNQQIHIEPYLHQLMPSIITCLVAKRLGSRFSDNHWELRSFTANLVASVCKRYGHVYHNLQPRVTRTLLHAFLDPTKALPQHYGAIQGLAAFGPSVVRLLILPNLEPYLRLLEPEMQLEKQKNGMKRHEAWRVYGALLCAAGTCMYDRLKTFPNLLSPPTRAILKSNKKILPTKPKINPGKRKASTDNLMQQPPLKKLATDGSMGVMPINSLAVDKQGLTGGFSTSTAVGSSDVGLSSMSQQLASENISGGRREVGTRALKASAVLAQAWKDVNAGQLSASLFEYFGESMFCFTPSPELSLFL* 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7378798 7386028 + Vvi19g584 Vvi19g584 782083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g584 547 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 1 547 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Vvi19g584 547 Pfam TAF6 C-terminal HEAT repeat domain 262 349 IPR011442 GO:0006367
Vvi19g584 547 SUPERFAMILY Histone-fold 4 76 IPR009072 GO:0046982
Vvi19g584 547 Gene3D - 167 372 IPR046344 GO:0006367
Vvi19g584 547 SMART TAF_cls 2 68 IPR004823 -
Vvi19g584 547 Pfam TATA box binding protein associated factor (TAF) 1 66 IPR004823 -
Vvi19g584 547 Gene3D Histone, subunit A 1 67 IPR009072 GO:0046982
Vvi19g584 547 CDD TAF6C 168 384 IPR011442 GO:0006367
Vvi19g584 547 SUPERFAMILY ARM repeat 201 391 IPR016024 -
Vvi19g584 547 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 1 547 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g584 K03131 TAF6; transcription initiation factor TFIID subunit 6 - vvi:100265835 1083.17
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g584 . . . . Bpe09g00146 . . . . Cmo06g00885 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy06g01863 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011323 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 0 1 1 0 1 1 1 0 3 3 1 31