Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g585 ATGGAATCGGCTAAGATTAAGGTTGTGGGTGTCGGTGGTGGGGGCAACAATGCCGTTAATCGGATGATTGGAAGCGGATTACAGGGTGTTGATTTCTATGCAATAAATACAGACTCTCAAGCTCTATTACACTCTGCGGCTTCGAACCCTCTCCAAATTGGAGAACTTTTGACTCGTGGACTAGGTACGGGTGGGAATCCACTTTTGGGGGAACAGGCTGCTGAGGAATCAAAGGAAGCCATTGCAAATGCTCTCAAGGGTTCAGATCTTGTGTTTATAACAGCAGGTATGGGTGGGGGTACAGGTTCTGGGGCTGCCCCAGTTGTTGCCCAAATATCTAAGGAAGCGGGTTATTTGACTGTTGGGGTGGTCACCTACCCTTTCAGCTTTGAAGGACGTAAAAGATCACTGCAGGCATTGGAGGCTATTGAAAAGTTGCAAAAGAATGTTGACACACTAATAGTAATTCCCAATGATCGTCTGCTGGATATTGCCGATGAACAGACACCTCTTCAGGATGCTTTCCTGCTTGCTGATGATGTTTTGCGCCAAGGGGTGCAAGGGATTTCAGACATAATTACAATACCCGGGCTGGTAAATGTTGATTTTGCAGATGTAAAGGCAGTCATGAAGGACTCTGGAACTGCAATGCTTGGAGTGGGGGTTTCTTCCAGCAAAAACCGTGCAGAAGAAGCAGCCGAACAGGCAACTTTGGCTCCTCTAATTGGATCCTCTATCCAATCTGCTACAGGTGTTGTCTACAATATTACTGGGGGAAAGGACATAACCTTGCAAGAAGTTAATAGAGTGTCTCAGGTTGTTACAAGTCTGGCCGATCCTTCAGCTAACATAATATTTGGAGCTGTTGTGGACGACCGCTACAATGGGGAGATTCATGTGACTATAATTGCAACCGGGTTCTCCCAGTCTTTCCAGAAGATACTTCTAACAGACCCCAAGGCAGCAAAGCTAGTGGACAGAGTAGCAGGAGGTCAAGAAAACAAAGGACTACCCATCCCCCTCAAATCCTCTAACTCACCTCCCGCTGTTCCATCTCGGTTGCCTTCTAGAAAGCTCTTCTTTTAA 1086 46.59 MESAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLHSAASNPLQIGELLTRGLGTGGNPLLGEQAAEESKEAIANALKGSDLVFITAGMGGGTGSGAAPVVAQISKEAGYLTVGVVTYPFSFEGRKRSLQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYNGEIHVTIIATGFSQSFQKILLTDPKAAKLVDRVAGGQENKGLPIPLKSSNSPPAVPSRLPSRKLFF* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7386092 7390777 - Vvi19g585 Vvi19g585 782084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g585 361 Gene3D - 213 317 IPR037103 -
Vvi19g585 361 SMART Tubulin_4 5 197 IPR003008 GO:0005525
Vvi19g585 361 Pfam FtsZ family, C-terminal domain 214 307 IPR024757 -
Vvi19g585 361 ProSitePatterns FtsZ protein signature 1. 36 70 IPR020805 GO:0005525
Vvi19g585 361 Hamap Cell division protein FtsZ [ftsZ]. 1 330 IPR000158 GO:0003924|GO:0005525
Vvi19g585 361 Pfam Tubulin/FtsZ family, GTPase domain 5 165 IPR003008 GO:0005525
Vvi19g585 361 ProSitePatterns FtsZ protein signature 2. 89 110 IPR020805 GO:0005525
Vvi19g585 361 SUPERFAMILY Tubulin C-terminal domain-like 199 313 IPR008280 -
Vvi19g585 361 Gene3D Tubulin/FtsZ, GTPase domain 1 212 IPR036525 -
Vvi19g585 361 MobiDBLite consensus disorder prediction 336 355 - -
Vvi19g585 361 CDD FtsZ_type1 21 306 IPR000158 GO:0003924|GO:0005525
Vvi19g585 361 PRINTS Cell division protein FtsZ signature 90 110 IPR003008 GO:0005525
Vvi19g585 361 PRINTS Cell division protein FtsZ signature 118 139 IPR003008 GO:0005525
Vvi19g585 361 PRINTS Cell division protein FtsZ signature 181 203 IPR003008 GO:0005525
Vvi19g585 361 PRINTS Cell division protein FtsZ signature 204 225 IPR003008 GO:0005525
Vvi19g585 361 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 98 104 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vvi19g585 361 SUPERFAMILY Tubulin nucleotide-binding domain-like 4 200 IPR036525 -
Vvi19g585 361 PANTHER CELL DIVISION PROTEIN FTSZ HOMOLOG 1, CHLOROPLASTIC 1 361 - -
Vvi19g585 361 SMART Tubulin_C_4 199 316 IPR018316 -
Vvi19g585 361 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 1 361 IPR045061 GO:0003924|GO:0005525
Vvi19g585 361 TIGRFAM ftsZ: cell division protein FtsZ 3 312 IPR000158 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g585 K03531 ftsZ; cell division protein FtsZ - vvi:100243513 667.537
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g585 . . . . . . Bma10g00581 Bma13g01095 . Cmo06g00884 . . . . . . . . . . . . . . Cla10g00460 Cam10g0446 Cec10g0469 Cco10g0457 Clacu10g0467 Cmu10g1296 Cre10g0701 Cone6ag0040 Cone9ag0046 . . . Csa03g00458 . Cme06g02820 Blo07g00880 Blo10g00853 . Bda12g00939 . . . . . . . . . . . . . Bhi11g00549 . . . . Mch10g1390 . . . . . . . . Lsi05g00545 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006787 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37