Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g590 ATGGATGGTGAGATAAAAAGCTTGATCAAGGTATGGATCTCAGCTATCAGCTCTATCTGTTATTGTTATTTCTTTGTAGTCCGCCTCCCGGTAGGTCTTTTCAGGCTCCTCTTTCTTCTTCCCATGTTTTACCTCTTCATCATCCTCCCCTTGAACCTCTCCTCCGCCCATCTTGTTGGGACCACAGCCTTTTACCTTGCTTGGCTTGCCAACTTCAAGTTTATCCTCTTCTCCTTCGGCCATGGCCCTTTATCATTCCCATCACACCCCCCAAAATCTGTCCTCCGCTTCATTTCTATTGCTTGTCTTCCTATTAAGATCAAGACTGTCCCATCTCCAAAATCACATTCAAAAGTCGCCTTTCTCATCAAAGCGTTGGCTTTAGCTGCATTGTTGAAGGTCTACAAGTACAGACAATTTTTGCATCCAAACGTCATCTTAGCTCTCTACTGTTGCCACGTGTACCTCGCCGCTGAACTTATCCTGGCCCTGGCTGCAGCCCCGGCTCGAGCCATCGGCCTGGAGCTCGAGCCACAGTTCAATGAACCCTACCTCGCAACTTCTCTACAGGATTTCTGGGGGCGTAGGTGGAACCTCATGGTAAGCAGTATCCTGCGCCCCACCATATACTTTCCCATCCTGACTCCCACGTGGGAAGTCACGTGGTTCTTCGTGCTACAAGGGGTGTGCACCGCCGCGGAGGTGGCGGCCAAGAAGGCTGCAGCAGGACGGTGGCAGTTGCCCCCGGCGGTCACCAGACCGTTGACGGTTGTCTGTCTCTCTGTTCTTGCGTCTCTCTGCTACTCCTACTTCATCGTCTCCAAGATACCCAAAGGCAAGTTCAGACTCCTTTCTCTTCTCCCAATCTTCTCCCTTTTCGTCGCTCTCCCTCTCTTCCTCTCTACTGCCATTCTCTCCGGCATCACTGCTTTCTTCATCACCTGGCTAGCCACCTTCAGACTCGCTCTCTTTTCCTTCGATTTAGGTCCTCTCTCCACTGGCTCACCAAAGTCTCTTCTTGTCTTCATCGCCATTGCTTGTCTTCCCATCAAAATCAAGCCAAATCAGCAACATCCGTCTCGCCAAGAACCCCATAAACCCCCAAGATTACCCCTTAATTTTGCAGTCAAAGTCTTGGCTTTTGGGGTTTTCATCGGATTTTATCAGTATAAAGAACTAGTACACCCCAAAATTTTCTTGGGTCTGCTTTGTTGCCAAGTTTTTCTGTTCCTCGAGGTTCTTTTCAGTCTCTGCAGCGCTCTGGTGCGATGCACGATGGGGCTGGAGGTGGAGCAGCCGTCTGATGAACCGTACTTGTCGACCTCGCTGCAGGACTTCTGGGGACGGAGGTGGAACCTCATGGTAACGAATCTGCTGCGTCACACAGTATACAAGCCCGTAAAGTCGGCAGCCGAGACAGTGATGAGCGAGCGCTGGTCGCCGCTCCCGGCGGTGGTGGCAACGTTTTTGGTGTCCGGTTTGATGCACGAGTTGCTGTTCTACTACGTCAATCGTGTGAGCCCGTCGTGGGAGATGACGTCCTTCTTTGTGCTGCATGGAGTGTGCTTGGTGGTAGAGGTTGGCGTTAAGTCAGTGTTCTCCGGCCGGTGGCGGCTGCACTGGGCGGCGTCAGTGCCGCTCACCGTGGGCTTCGTGGTGGCTACCAGCTTCTGGCTGTTTTTCCCACCGCTGATCAGAGCCGGTGCTGATATGAGAGTCATGGAAGAAGTAAAAGTCTTGTTGGAGCCTATGAGGGAAAAGATCCCACTACTCCCACTACTCAACTCAACAAGGGAGCAGCTTCTCTTATTTGATCTTTCTGGCAGACACAAGTGA 1836 51.69 MDGEIKSLIKVWISAISSICYCYFFVVRLPVGLFRLLFLLPMFYLFIILPLNLSSAHLVGTTAFYLAWLANFKFILFSFGHGPLSFPSHPPKSVLRFISIACLPIKIKTVPSPKSHSKVAFLIKALALAALLKVYKYRQFLHPNVILALYCCHVYLAAELILALAAAPARAIGLELEPQFNEPYLATSLQDFWGRRWNLMVSSILRPTIYFPILTPTWEVTWFFVLQGVCTAAEVAAKKAAAGRWQLPPAVTRPLTVVCLSVLASLCYSYFIVSKIPKGKFRLLSLLPIFSLFVALPLFLSTAILSGITAFFITWLATFRLALFSFDLGPLSTGSPKSLLVFIAIACLPIKIKPNQQHPSRQEPHKPPRLPLNFAVKVLAFGVFIGFYQYKELVHPKIFLGLLCCQVFLFLEVLFSLCSALVRCTMGLEVEQPSDEPYLSTSLQDFWGRRWNLMVTNLLRHTVYKPVKSAAETVMSERWSPLPAVVATFLVSGLMHELLFYYVNRVSPSWEMTSFFVLHGVCLVVEVGVKSVFSGRWRLHWAASVPLTVGFVVATSFWLFFPPLIRAGADMRVMEEVKVLLEPMREKIPLLPLLNSTREQLLLFDLSGRHK* 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7471402 7478122 - Vvi19g590 Vvi19g590 782089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g590 611 PANTHER LONG-CHAIN-ALCOHOL O-FATTY-ACYLTRANSFERASE 3-RELATED 215 258 IPR044851 GO:0006629|GO:0008374
Vvi19g590 611 PANTHER LONG-CHAIN-ALCOHOL O-FATTY-ACYLTRANSFERASE 3-RELATED 1 213 IPR044851 GO:0006629|GO:0008374
Vvi19g590 611 PANTHER LONG-CHAIN-ALCOHOL O-FATTY-ACYLTRANSFERASE 3-RELATED 258 588 IPR044851 GO:0006629|GO:0008374
Vvi19g590 611 Pfam Membrane bound O-acyl transferase family 177 214 IPR032805 -
Vvi19g590 611 Pfam Membrane bound O-acyl transferase family 436 517 IPR032805 -
Vvi19g590 611 PANTHER (MEMBRANE BOUND O-ACYL TRANSFERASE) FAMILY PROTEIN, PUTATIVE-RELATED 1 213 - -
Vvi19g590 611 PANTHER (MEMBRANE BOUND O-ACYL TRANSFERASE) FAMILY PROTEIN, PUTATIVE-RELATED 215 258 - -
Vvi19g590 611 PANTHER (MEMBRANE BOUND O-ACYL TRANSFERASE) FAMILY PROTEIN, PUTATIVE-RELATED 258 588 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g590 - - - vvi:100255629 712.605
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g590 . . Bda07g00382 . . . . . . . Cma01g01106 Cma09g00979 . . . Cpe06g00789 Cpe02g00794 Bhi09g01707 Tan01g3137 . . . Mch11g1224 . . . . . . . . . Cone9ag0042 . . Lsi02g01871 Csa07g00999 . . . . . . . . . . . Cmo01g01152 Cmo09g00980 . . . . . . . . . . . . . Cla09g01039 Cam09g1094 Cec09g1094 Cco09g1117 . . Cre09g1059 . . Chy01g01067 Cme01g00987
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001163 4 2 0 2 3 2 1 2 2 2 2 2 2 2 2 3 2 3 3 2 2 11 3 2 3 2 4 2 2 1 75