Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g591 ATGGCATCTTCAGATGATGAGGGTGAGACTCTGCCAGGGTCTGTCTCAAATTACCATTTTGTAGATGACAAAGGTGAACCCATTTCATTTTCGGTTCTGCCTATTCAATGGAGCAAGGGTGACAACCTGGATAGCAAGAAGGAACCTATTTTCTTGGATGGTAATGCTGACAATGGGCTACAGAAGATTTATAAGCAGGTCATTGCATGGAAGTTTGATCTTTCCGATGTGAATCCTGAAATATCAGTGCTCTCCAAGGAAAATAACTGGATCAAGCTTCAAAAGCCAAGGAAGAGCTTTGAGGATATTATCAGGTCTATCTTGATAACTGTGTGGTGTCTTCATTCTATGAAGAAAAATCCTGAAACATCTGGGAAATCATTATGGGATCACTTGTCTAGAGTTTTCAGCTTGTACGATGTCAGACCTTCTGAGAATGATTTGGTGGATCATACCACTTTAATCAGTGAAGCTGTTAAAAGGGATGAGGGCTTAGCAAAATCCAAGTTTTTGCTCACATTTCTTGAGGAGAAGCCCAGGAAGAGGAAATCTTTTGAGGATGTTCCAACTACATCAAAGCCTGGGTTTATAGTTGATTATATGGATGAAGATGGAATAAGTGAAACCGGAGAAGTTGGTTCTGATGAAGAGGAGGACCTGTTTGATTCTGTGTGTTCGATGTGTGATAATGGTGGTGATCTTTTGTGCTGTGAAGGGAGATGTATGAGGTCATTTCATGCAACTAAAGAAGCTGGAGAGGAATCACTCTGTGCTACACTTGGAATGTCTGTGGCTCAAGTAGAAGCCATGCAGAATTTTTATTGTAAAAACTGTAAATACAAGCAGCACCAGTGTTTCTCTTGTGGGAAGCTTGGCTCTTCTGACAAATCTTCAGGCGCTGAGGTCTTTCTCTGTGCTAATGCAACCTGTGGACGATTTTATCATCCACAATGCGTTGCAAAACTGCTTCACCGGGAGGATGAAGCTGCAGCAGAAGAGCTTCAGAAAAATATTTATGCAGGGGAATTATTTGCTTGCCCTATTCATAGATGCCATGTCTGTAAACAAGGAGAAGATAAAAAGGATCTGGAGTTGCAGTTTGCTATATGTAGACGTTGTCCCAAGTCATATCATAGGAAATGCCTGCCTAGGAAAATTTCTTTTGAAGACTTGGATGAAGAAGGAATCATACAGAGGGCTTGGGATGGCCTATTGCCCAACCGTATTTTGATATATTGCTTAAAACATGAGATTGATGAACTACTTGGGACCCCTATAAGAGATCACATAAAATTCCCTAATGATGAAGAAAAAATGGAAAAACGAAGATCGGAGTTGTTCTCAAGCAGAAAGGACTTGGACAAGGTTGTGTCAAAGAAGAGAAGTCTGGTCTCAGAAGACTCCCCACATGGTGATTCTACCAAAAAAAGTGAGAAAAGATCATCTGGACCAGATCCTTCAAAGAGACTCAAAGTAACTGGTTTCTCCAAAAAATCTTTGGATGACAATGATACACCTAATAGTGAACTGGAACAAAAGGTTGTCACAAAGAAAACGAGCAGTTCATTGCCTTCATTAGATCGGGATTCAGAGAATAGAATATTGGCCATAATTAAGGAGTCAAAGTCTTTAATAACTTTGGAAGATGTCATGAAAAAGCACAAAGTGCCATCTACCCATGCATACTCGTCAAAAAATACAGTTGACAGGACTATTACACAGGGAAAGGTGGAGGGCTCTATTGAGGCTCTTCGAGCAGCTTTAAAGAAGCTAGAAGGAGGGGGCAGTATTGAAGATGCAAAAGCTGTTTGTGAGCCAGAGGTTTTGAACCAGATAGTTAAGTGGAAGAACAAGCTTAAAGTTTATCTTGCACCTTTTCTCCATGGCATGCGGTATACTTCTTTTGGTCGCCACTTCACAAAAGTGGACAAGCTTAAAGAGATTGTTGAGAAGCTCCATTATTATGTAAAAAATGGTGACACAATAGTCGACTTTTGCTGCGGTGCTAATGATTTCAGTTGCCTGATGAAACAAAAGCTTGAGGAGATGGGGAAGAAGTGCTCATACAAAAATTATGATGTTATTCAACCCAAGAATGATTTTAACTTTGAGAAGAGGGATTGGATGAGTGTTAAACAGAAGGAATTACCTACAGGGTCACAATTGATCATGGGGCTAAATCCTCCCTTTGGAGTTAAAGCGTCTCTGGCAAACATGTTTATTAATAAAGCTCTTCAGTTTAAACCAAAACTCCTTATTCTTATTGTTCCCCCAGAAACGGAAAGGCTAGATAAAAAGAGACCACCATATGATCTGATTTGGGAGGATGATAATGAACTCTCAGGCAAGTCGTTTTATTTGCCTGGATCTGTTGATGTAAATGACAAACAAATTGAGCAATGGAATGTGAACCCACCATTACTCTACCTTTGGAGCCGGCAAGATTGGACTACTAAACACAGGGCCATTGCTCAAAAGTGTGGCCATGTTTCCAGGCGACGCAGAGTGTCACATTTGGAAAAAATTCAGAATGAAGAGCCAGTCCTTGATCATCCAATGGCGGATCAGACTCATTCTGGTCATGTCTCCATGATGCTGGATGAGCATTCAGTGGAAAATCATGAACTTGAACACGAAGAAAGAAGAGAAATTGTGACTGCAGGTCGTGTAGAAAGTTCTCCTCACAGTGGTGTTGACAGAGAAGACCATGGGAAGAAGCTTCTCAATGAGAACTCAAAACAGAGGCATGGTAAAGGGAAGCATGAAAAAAGAACAGAGAATATATCAGATGACAAACAGATAATGACACCTGTGAGTGAGATGTGCAAGGGAACTTCTTGCACTTCCTCACCTCGTGCAAGTGATGCCAGGTCCACAGTGGACATTCACCAACCTGAAGCCCTCAAGAAGTCCTCACCTGTGGAGGTTGGCGAGGAAGTTTATCCACATTTCCAGCCTGGTGTTCCTGACTCAAGTTTACAGAGAACAGGATATGGTGGGTCTCATGCTAGCATTCCAGAGGACATGGCAAGGAGGTACAGGCTGGACAGTGAAGAACCTTTTTCTAGTACGATCCACAGATGGTCAACTGGTGTTAGTCCTGGCCTTGATTATGGAATTAGGAACTCAGAGGAACCATTTACCAGTTACATGAGAGGCAGCATTGACAACCTTGGTTATAGGCATAGCATCCGAGACAGAGATGAGTATGGAAGGAATGCAGATATACGATCACAAGTTCAATCTTATGGGCTACATGATCCCATTGGTATGTCTCAGAGGAGCAACTATTTAGCTGGTCAGGATCCCCGGTTTGGCCAAATGGGTTCATTTCCATCTACTTATGGGCATCCAGGTTCAGGAGCGGAGTCATCTTACAGTAGGATGAACACATCAGCAATGCAGCGATATGCGCCTCAACTCGATGAATTAAACCACACAAGGATGAATTCTTTTGGATATGAACGGCCCATGCCAATTAGAAATAACATCTATGATCCTCTTGCACCCCCCCGACCTGGATTCCAAGCTGATTCAATGGGCTTTGCTCCGGGCCTTCATCACCCATTTTCAAAGCAAAACTCATCTGGTTGGCTCAATGAGTAG 3606 42.1 MASSDDEGETLPGSVSNYHFVDDKGEPISFSVLPIQWSKGDNLDSKKEPIFLDGNADNGLQKIYKQVIAWKFDLSDVNPEISVLSKENNWIKLQKPRKSFEDIIRSILITVWCLHSMKKNPETSGKSLWDHLSRVFSLYDVRPSENDLVDHTTLISEAVKRDEGLAKSKFLLTFLEEKPRKRKSFEDVPTTSKPGFIVDYMDEDGISETGEVGSDEEEDLFDSVCSMCDNGGDLLCCEGRCMRSFHATKEAGEESLCATLGMSVAQVEAMQNFYCKNCKYKQHQCFSCGKLGSSDKSSGAEVFLCANATCGRFYHPQCVAKLLHREDEAAAEELQKNIYAGELFACPIHRCHVCKQGEDKKDLELQFAICRRCPKSYHRKCLPRKISFEDLDEEGIIQRAWDGLLPNRILIYCLKHEIDELLGTPIRDHIKFPNDEEKMEKRRSELFSSRKDLDKVVSKKRSLVSEDSPHGDSTKKSEKRSSGPDPSKRLKVTGFSKKSLDDNDTPNSELEQKVVTKKTSSSLPSLDRDSENRILAIIKESKSLITLEDVMKKHKVPSTHAYSSKNTVDRTITQGKVEGSIEALRAALKKLEGGGSIEDAKAVCEPEVLNQIVKWKNKLKVYLAPFLHGMRYTSFGRHFTKVDKLKEIVEKLHYYVKNGDTIVDFCCGANDFSCLMKQKLEEMGKKCSYKNYDVIQPKNDFNFEKRDWMSVKQKELPTGSQLIMGLNPPFGVKASLANMFINKALQFKPKLLILIVPPETERLDKKRPPYDLIWEDDNELSGKSFYLPGSVDVNDKQIEQWNVNPPLLYLWSRQDWTTKHRAIAQKCGHVSRRRRVSHLEKIQNEEPVLDHPMADQTHSGHVSMMLDEHSVENHELEHEERREIVTAGRVESSPHSGVDREDHGKKLLNENSKQRHGKGKHEKRTENISDDKQIMTPVSEMCKGTSCTSSPRASDARSTVDIHQPEALKKSSPVEVGEEVYPHFQPGVPDSSLQRTGYGGSHASIPEDMARRYRLDSEEPFSSTIHRWSTGVSPGLDYGIRNSEEPFTSYMRGSIDNLGYRHSIRDRDEYGRNADIRSQVQSYGLHDPIGMSQRSNYLAGQDPRFGQMGSFPSTYGHPGSGAESSYSRMNTSAMQRYAPQLDELNHTRMNSFGYERPMPIRNNIYDPLAPPRPGFQADSMGFAPGLHHPFSKQNSSGWLNE* 1202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7478513 7493598 - Vvi19g591 Vvi19g591 782090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g591 1201 MobiDBLite consensus disorder prediction 941 957 - -
Vvi19g591 1201 MobiDBLite consensus disorder prediction 1167 1201 - -
Vvi19g591 1201 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 1142 - -
Vvi19g591 1201 MobiDBLite consensus disorder prediction 458 526 - -
Vvi19g591 1201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 281 IPR013083 -
Vvi19g591 1201 SMART PHD_3 284 350 IPR001965 -
Vvi19g591 1201 SMART PHD_3 351 417 IPR001965 -
Vvi19g591 1201 SMART PHD_3 224 279 IPR001965 -
Vvi19g591 1201 CDD PHD3_NSD 350 416 - -
Vvi19g591 1201 CDD PHD2_NSD 284 349 - -
Vvi19g591 1201 MobiDBLite consensus disorder prediction 887 926 - -
Vvi19g591 1201 Pfam Cytosine specific DNA methyltransferase replication foci domain 15 136 IPR022702 -
Vvi19g591 1201 MobiDBLite consensus disorder prediction 509 526 - -
Vvi19g591 1201 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 1142 - -
Vvi19g591 1201 MobiDBLite consensus disorder prediction 941 960 - -
Vvi19g591 1201 MobiDBLite consensus disorder prediction 458 508 - -
Vvi19g591 1201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 399 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g591 - - - vvi:100243584 2410.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g591 Blo03g00537 . Bda07g00383 . . . . . . . Cma01g01105 . Car01g00978 . . . Cpe02g00796 Bhi09g01710 . . . . . . . . . . . . . . . Cone14ag1189 Cone15ag1208 Lsi02g01869 Csa07g00996 . . . . . . Bpe11g00561 . . . . Cmo01g01151 . . . . . . . . . . . . . . Cla09g02036 Cam09g2125 Cec09g2190 . . . . . . Chy01g01070 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003000 1 4 2 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 10 1 1 1 1 1 1 3 1 2 46