Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g593 ATGGTTACAGACGAAGCGATAGCAGAAGCCCTGGACTCCCTCATACGCGAATCAACCCCGTCTCAATTCACCTCCATAAACGGTGTTGTTTTACAGCTCGAGTCCAAGCTAGGGCTAAATCTGTCCCACAAGCTCGAGTTCATTCGCTCCCAGATCCATCTCTTCTTCCAATCCCACCAGCCACAGTCACAACCGCCGCCCCCGCAGCCACCCTCACAACAGCAACCCCCGAAAGACCATTTTACCCTACAGCAAGCAACCAATTTCTCAACTGGCCCTCCCAATTTCGCCCCTCACCGCACCGAGGACCTCAATTTCCGGCGCGACCCAACTCCTGCCCCTCCGGCCGAGCCCACTGGCGGCCCCGTTGCAGTCCCCGAGGCTCCGCCTCAAGAAAGTGCTCGAGCTGGAACTAAAAGAAGAGGTGGTCCAGGGGGTCTAAACAAAGTTTGCGGTGTTTCACCTGAACTTCAGACCATTGTTGGCCAGCCAGCGCTGCCAAGGACCGAGATTGTGAAACAGCTCTGGGCATACATAAGGAGAAACAATCTCCAAGATCCAAGTAACAAAAGGAAGATAATTTGCAACGATGAGCTACGTTTGGTATTTGAGACAGACAGTACTGACATGTTCAAGATGAATAAGTTGCTAGCTAAACATATAATCCCTCTTGAACCTACTAAACAGTCAGGTGAACAGTCGAAGAAATTAAAGGTTGATGCAGGAGCTGGAACAAAAAGTTCTGAATCTGGGCCCTATGTAGTAATATCTGAAGCACTTGCAAATTTTTTTGGTACTAGTGGAAGGGAGATGCTTCAGTCCGAGGTGTTAAGACGTGTTTGGGAATACATAAAGGTCAATCATCTGGAGGATCCTCTAAATTCAATGGTGATACTTTGTGATGCAAAGCTTCAAGAGATTTTTGGATGTGAGAGCATTTCTGCATTAGGGATACCTGAAATCTTGATGCGCCATCATCTATGTAAGAGATCATGA 996 48.19 MVTDEAIAEALDSLIRESTPSQFTSINGVVLQLESKLGLNLSHKLEFIRSQIHLFFQSHQPQSQPPPPQPPSQQQPPKDHFTLQQATNFSTGPPNFAPHRTEDLNFRRDPTPAPPAEPTGGPVAVPEAPPQESARAGTKRRGGPGGLNKVCGVSPELQTIVGQPALPRTEIVKQLWAYIRRNNLQDPSNKRKIICNDELRLVFETDSTDMFKMNKLLAKHIIPLEPTKQSGEQSKKLKVDAGAGTKSSESGPYVVISEALANFFGTSGREMLQSEVLRRVWEYIKVNHLEDPLNSMVILCDAKLQEIFGCESISALGIPEILMRHHLCKRS* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7512780 7517479 + Vvi19g593 Vvi19g593 782092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g593 331 PANTHER - 1 72 - -
Vvi19g593 331 PANTHER - 129 327 - -
Vvi19g593 331 MobiDBLite consensus disorder prediction 61 75 - -
Vvi19g593 331 Pfam SWIB/MDM2 domain 255 325 IPR003121 -
Vvi19g593 331 Pfam SWIB/MDM2 domain 151 221 IPR003121 -
Vvi19g593 331 SMART swib_2 250 331 IPR019835 -
Vvi19g593 331 SMART swib_2 147 226 IPR019835 -
Vvi19g593 331 CDD SWIB-MDM2_like 254 325 - -
Vvi19g593 331 MobiDBLite consensus disorder prediction 76 95 - -
Vvi19g593 331 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 72 - -
Vvi19g593 331 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 129 327 - -
Vvi19g593 331 ProSiteProfiles SWIB/MDM2 domain profile. 146 223 IPR003121 -
Vvi19g593 331 MobiDBLite consensus disorder prediction 111 125 - -
Vvi19g593 331 ProSiteProfiles SWIB/MDM2 domain profile. 249 328 IPR003121 -
Vvi19g593 331 CDD SWIB-MDM2_like 151 221 - -
Vvi19g593 331 Gene3D SWIB/MDM2 domain 244 331 IPR036885 -
Vvi19g593 331 Gene3D SWIB/MDM2 domain 142 231 IPR036885 -
Vvi19g593 331 SUPERFAMILY SWIB/MDM2 domain 139 226 IPR036885 -
Vvi19g593 331 MobiDBLite consensus disorder prediction 58 150 - -
Vvi19g593 331 Pfam DEK C terminal domain 2 56 IPR014876 -
Vvi19g593 331 SUPERFAMILY SWIB/MDM2 domain 245 326 IPR036885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g593 K15223 UAF30, SPP27; upstream activation factor subunit UAF30 - vvi:100264067 617.461
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g593 Blo03g00535 Blo03g01462 Bda07g00384 Bda09g00413 . Bpe08g01108 . . . . Cma01g01104 . Car01g00976 . . . Cpe02g00797 Bhi09g01716 . . . . . . . . . . . . . Cone6ag0039 Cone9ag0041 . . Lsi02g01868 Csa07g00991 . . . . . . Bpe11g00562 . Bma07g01280 Bma14g00318 . Cmo01g01150 . . . . . . . . . . . . . . Cla09g02037 Cam09g2126 . . . . . . . Chy01g01071 Cme01g00979
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004875 2 3 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14429 PF02201 SWIB 8.10E-19 No_clan Vvi TR