Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g594 ATGTCAGCTTCTGGGTTTGCTATGAACATCGCGGGGGACCACGCCCAGGTCGTCCTGATTTCAGTTTTCGTGGCTGTTCTCTGCCTATGTTTGGTCATCGGTCACTTGCTCGAAGAAAATCGATGGCTCAATGAATCCACCACTGCTATTATCATCGGATGCATAACGGGAACCATAATCTTGTTGTTGAGCAAAGGGAAAAGCTCTCACATCCTAAGGTTTAATGAAGAACTGTTCTTCATATATCTCCTCCCACCCATAATATTCAATGCCGGGTTTCAGGTCAAGAAGAAACAGTTCTTCCAAAACTTCATAACCATTATGCTGTTTGGAGTGATAGGTGTTTTTATATCCTCATCCATTATTACAGCTGGAGCCTGGTGGCTGTTTCCTCGGTTTGGATTTACCGGTCTGAGTGCACAAGACTATCTTGCTATAGGAACAATTTTTTCATCAACAGATACAGTGTGTACACTGCAGGTTCTGCATCAAGATGAGACTCCTTTACTATACAGCCTAGTCTTCGGAGAAGGAGTTGTGAATGACGCAACATCGGTTGTTCTGTTCAATGCAGTTCAAAAGCTTGATAAGAGCAAACTTAATGGGTGGGCAGCACTTCGAGTGCTTCTGGATTCCTTATACCTGTTTTCAACAAGCACTGCTCTTGGAGTCGTTGCTGGGCTTTTGACAGCATATACCCTTAAAACCTTGTATATTGGAAGACATTCAACTGTTCGTGAAATTGCTTTAATGGTTTTAATGGCATATCTGTCCTACACGTTGGCTGAGTTGTTTCACCTAAGTGGGATCCTCACCGTCTTCTTCTGTGGGATTCTCATGTCACACTATGCATCGCATAATGTGACTCAAAGTTCAAGAATCACAACCAGGCATATATTTGCAACAATGTCATTTATTGCAGAAACATTCATATTTCTTTATGTGGGAATCGATGCTTTGGACATTGAGAAGTGGAAGCTCAGCAAGTTAAGTTTCAGGACTTCGGTGGGCATCTATAGTACTGTAGTTTTACTAATCTCGCTTGGCCGTGCTGCATTTGTATTTCCTCTGTCCACCTTCTCCAATTATGTGCATAGACGTGCTGATAGATTGTCATCAATTTCGTTCAAACACCAGGTAATAATTTGGTGGGCTGGGCTCATGAGAGGAGCTGTTTCTATTGCTCTAGCATTCAAACAGTTCACATACTCGGGGGTTACCTTGGATCCAGCTAATGCTACAATGGTTACTACCACCATAATAGTCGTGCTCTTCACAACGCTGGTGTTTGGTTTTCTGACAAAGCCGCTTATAAGTTTTCTGCAACCTCACCATACAAATAACAATACCAGCCATGGGGAACCAAGATCACCCAAAGAGGACCTCAGCCTGCCTTTGCTATCCTTAGAAGAATCTGCTGAGACTAACATCCTTCGAGCAAAGGAGAGTTTGTCCATGCTAATAGAAAGGCCAGTATACACCATACATAACTACTGGAGGAAGTTCGATGATACGTACATGAGACCAGTATTTGGTGGGCCGTATGAATCAGGTAACTCTCAGTATTTCTTATGA 1575 42.79 MSASGFAMNIAGDHAQVVLISVFVAVLCLCLVIGHLLEENRWLNESTTAIIIGCITGTIILLLSKGKSSHILRFNEELFFIYLLPPIIFNAGFQVKKKQFFQNFITIMLFGVIGVFISSSIITAGAWWLFPRFGFTGLSAQDYLAIGTIFSSTDTVCTLQVLHQDETPLLYSLVFGEGVVNDATSVVLFNAVQKLDKSKLNGWAALRVLLDSLYLFSTSTALGVVAGLLTAYTLKTLYIGRHSTVREIALMVLMAYLSYTLAELFHLSGILTVFFCGILMSHYASHNVTQSSRITTRHIFATMSFIAETFIFLYVGIDALDIEKWKLSKLSFRTSVGIYSTVVLLISLGRAAFVFPLSTFSNYVHRRADRLSSISFKHQVIIWWAGLMRGAVSIALAFKQFTYSGVTLDPANATMVTTTIIVVLFTTLVFGFLTKPLISFLQPHHTNNNTSHGEPRSPKEDLSLPLLSLEESAETNILRAKESLSMLIERPVYTIHNYWRKFDDTYMRPVFGGPYESGNSQYFL* 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7518930 7525059 - Vvi19g594 Vvi19g594 782093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g594 524 PRINTS Na+/H+ exchanger signature 78 89 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vvi19g594 524 PRINTS Na+/H+ exchanger signature 92 106 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vvi19g594 524 PRINTS Na+/H+ exchanger signature 107 115 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vvi19g594 524 PRINTS Na+/H+ exchanger signature 147 157 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vvi19g594 524 Pfam Sodium/hydrogen exchanger family 21 438 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vvi19g594 524 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 18 455 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vvi19g594 524 PANTHER SODIUM/HYDROGEN EXCHANGER 7 518 - -
Vvi19g594 524 Gene3D - 10 448 IPR038770 -
Vvi19g594 524 PANTHER SODIUM/HYDROGEN EXCHANGER 7 518 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g594 - - vvi:100258969 970.304