Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g595 ATGTCCAAGCTCCGGCAGGTCATTCTCCTGTTTCTTCTCCACTCAGTTGCTTTGGTCTCTGCTCAGGGATCTACAAACGGAACCAGCTCTTGGCAGACACTCAACGGAAATGCACCTTTGGTCATAGCACGTGGTGGGTTTTCAGGGCTATTTCCTGATTCTAGTTCAGCTGCATATAGTTTGGCATTAATGACCAGTTTGTCCAATGTGGTCCTCTGGTGTGATGTGCAATTAACAAAAGATGGAGCTGGAATTTGCTTTCCTGATATGAAGCTAGAGAATGCTTCCGATATTTCAATTGTTTTCAAAAACAGGAATAATGTCTACCTTGTCAATGGAGTCTCTACGCCAGGATGGTTTTCTGTTGATTTTACACTTACTGACCTCGAAACTGTTGCTTTAAATCAAGGAGTTTATTCTCGAAGTGGTAGGTTTGATGGTAATCTTTTCCCAATTCTTACCGTTCAAGAGATGGTTAAGCTAATAAGGCCACCAGGTTTATGGTTGAATCTTCAGCATGATGTATTCTATACAAAACACAATCTGAGTATGAGAAACTTTGTACTTTCTGTATCTAAAAGTGTTATAGTTGATTATATCTCATCACCAGAGGTGGCTTTTCTGAGAGGTGTCTCGCAACGATTTAAAGCAACGAAGACGAAATTGATCTTCCGATTTCTAGAAAAAGAGGAAACAGATCCCTCAACCAACCAAACTTATGGTTCTCTCCTAAATAATCTTACATTCATAAAGACATTTGCCTCTGGAATTCTTGTTCCCAAAGGTTACATATGGCCTGTGAATAAGAATTCATATTTGGAATCTTCTACCTTAGTTGTACAAAATGCTCATAAAGAAGGATTGGAAGTTTTTGGATCAGATTTTATCAACGATATTCCTTTTAGCTACAATTACAGTTATGATCCAATAGCTGAGGTCTTGAATTTCATTGACAATGATGCCTTCTCGGTCGATGGTGTACTATCTGACTTCCCAATAACTCCATCGGCAGCCATAGATTGCTTTGCTCACATTGGCAAAAATGCTTCAGGACAAGAAAAGCCTTTAATTATCTCATACAATGGAGCAAGTGGAGACTACCCTTCTTGTACTGATTTGGCATATACCAAAGCCATTTCAGATGGTGTAGATGTTCTTGATTGTAATGTTCAAATGACAAAGGATGGCACACCAATTTGCTTAAGCTCTATTAATCTTATGGATAGCACAAAAGTTGCCCAAACACCTTTCAGCACTTTTACAACAACTATTACAGAGCTTCAAAAAGGCAGTGGAATATTTACCTTCAACCTCACTTGGGAGGATATTCGTAGCTTGACCCCGGCAATATCAAACCCATATTCAACTTTCAGATTGTCCCGAAATCCAGCAGCCAAAACTGCTGGGAAATTGGTGTCATTGTCAGACTTTTTGAGCATTGCAAAAGAAGCAAATTCTCTTTCTGGTGGTGTCTTGATCGGCATTGAGCATGCAGCCTTCCTTGTGAAGGTGGGATTAAGCGTCACAGATGCAGTCCTTGACGCCTTGAGCAAAGCTGGTTATGATAATGTAACCACACCCAGAGTAATGATTCAGTCCACCAACAGTTCTGTGCTGAAGGAGTTCAAGGAAAAGAAGAAGAATTATGAGCTTGTGTACAGAGTTGATGAAAATATCCGTGATGCCTCTGATGCAACCATTGAGGACATCAAGAAATTTGCCACTTCTGTGGTTATCAGCAAAGATTCCATCTATCCTGAGAACAAGGCATTCATCACTGGTGCTACGGATATTGTATCAAGGCTCAAGAAGAATAATCTCCCCGTTTATGTACAACGCTTTGATAATGAGTTTATATCTCAGGCATGGGACTTCTTCTCAGATGCAACCGTAGAAATCAACTCATTTGTCACGGGAGCTGGAATTGATGGTGTAATCACAAGCTTCCCTCAAACAGCTGCTTCATATAGAAAGAACCGATGCTTAAAGTACAAGAATGCACCGTCATACATGAGTCCTGTTCAGCCTGGCAGTCTCATGCAAGTCATCACTAGCGACGACATGCCACCTGCTCTGGCTCCATACCCGGTGCTGACAGAGTCTGATGTGGCTGAACCTCCACTACAAGAAGTCGCACCAGCTACCCCGACTTCCAGCACAAACGCTGGAACTACAGCACCTGCTCCCACCTCACCAAACGGGCAACCTAGAATTGCCACATGCATTGTCCTGTCCAATCTTGCTGTGCTCCTTGTGGCCGTTCTGCTGCTATGA 2274 41.95 MSKLRQVILLFLLHSVALVSAQGSTNGTSSWQTLNGNAPLVIARGGFSGLFPDSSSAAYSLALMTSLSNVVLWCDVQLTKDGAGICFPDMKLENASDISIVFKNRNNVYLVNGVSTPGWFSVDFTLTDLETVALNQGVYSRSGRFDGNLFPILTVQEMVKLIRPPGLWLNLQHDVFYTKHNLSMRNFVLSVSKSVIVDYISSPEVAFLRGVSQRFKATKTKLIFRFLEKEETDPSTNQTYGSLLNNLTFIKTFASGILVPKGYIWPVNKNSYLESSTLVVQNAHKEGLEVFGSDFINDIPFSYNYSYDPIAEVLNFIDNDAFSVDGVLSDFPITPSAAIDCFAHIGKNASGQEKPLIISYNGASGDYPSCTDLAYTKAISDGVDVLDCNVQMTKDGTPICLSSINLMDSTKVAQTPFSTFTTTITELQKGSGIFTFNLTWEDIRSLTPAISNPYSTFRLSRNPAAKTAGKLVSLSDFLSIAKEANSLSGGVLIGIEHAAFLVKVGLSVTDAVLDALSKAGYDNVTTPRVMIQSTNSSVLKEFKEKKKNYELVYRVDENIRDASDATIEDIKKFATSVVISKDSIYPENKAFITGATDIVSRLKKNNLPVYVQRFDNEFISQAWDFFSDATVEINSFVTGAGIDGVITSFPQTAASYRKNRCLKYKNAPSYMSPVQPGSLMQVITSDDMPPALAPYPVLTESDVAEPPLQEVAPATPTSSTNAGTTAPAPTSPNGQPRIATCIVLSNLAVLLVAVLLL* 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7546610 7555444 + Vvi19g595 Vvi19g595 782094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g595 757 ProSiteProfiles GP-PDE domain profile. 355 657 IPR030395 GO:0006629|GO:0008081
Vvi19g595 757 SUPERFAMILY PLC-like phosphodiesterases 354 657 IPR017946 GO:0006629|GO:0008081
Vvi19g595 757 CDD GDPD_SHV3_repeat_2 355 656 - -
Vvi19g595 757 SUPERFAMILY PLC-like phosphodiesterases 37 337 IPR017946 GO:0006629|GO:0008081
Vvi19g595 757 MobiDBLite consensus disorder prediction 710 733 - -
Vvi19g595 757 Pfam Glycerophosphoryl diester phosphodiesterase family 46 291 IPR030395 GO:0006629|GO:0008081
Vvi19g595 757 Pfam Glycerophosphoryl diester phosphodiesterase family 361 652 IPR030395 GO:0006629|GO:0008081
Vvi19g595 757 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPDL3 7 756 - -
Vvi19g595 757 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 7 756 - -
Vvi19g595 757 ProSiteProfiles GP-PDE domain profile. 39 339 IPR030395 GO:0006629|GO:0008081
Vvi19g595 757 CDD GDPD_SHV3_repeat_1 39 338 - -
Vvi19g595 757 Gene3D Phosphatidylinositol (PI) phosphodiesterase 353 656 IPR017946 GO:0006629|GO:0008081
Vvi19g595 757 Gene3D Phosphatidylinositol (PI) phosphodiesterase 37 337 IPR017946 GO:0006629|GO:0008081
Vvi19g595 757 MobiDBLite consensus disorder prediction 712 733 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g595 - - vvi:100246982 1459.89