Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g6 ATGTCAGTGGCATGCCGGAGCCTTGATTTTGGTCCAACTGGGTTTGATTTGGTTGCTTGTGGGTGTTCTTCCAATGCTCAATTTGATAGGTTCTCACGGAGGAACTCTGCAAAGGGGGTGTCTAAGAGTAGTAGCAGAGGTTATGCTGCTAAAAAAATGGTGTATTGTCAGCGTCGCATTGGTCGTTGCAGGGTGTTTTCTACTAGGGCCCCTGAGACTTTGCTCAATGGTGTTGGTCAAGGTCCTCCACCAGCTTTGGATGTGAAGAAAGAGTCAAGCAGCTCAATATCCCTGGCAAGTTTTTTTGAAGTGGTTGCTGATGACCTCCAAATATTAAACCAAAATCTCCAGTCAATTGTTGGCGCAGAAAACCCAGTTTTAATGTCTGCAGCTGAGCAGATCTTTGGTGCTGGTGGGAAGAGGATGAGACCAGCTTTGGTATTCTTAGTATCTAGAGCCACTGCAGAAATAGCGGGGTTGAAGGATCTGACCATAAAACATCGACGTTTAGCGGAGATCATTGAGATGATCCATACTGCAAGCTTGATACATGATGATGTTTTAGATGAGAGTGATATGCGAAGAGGAAAGGAAACAGTTCATCAACTCTATGGCACACGAGTGGCAGTATTGGCTGGGGACTTCATGTTTGCACAGTCATCATGGTATCTTGCGAATCTGGAAAACCTTGAAGTCATAAAGCTCATCAGTCAGGTTATTAAAGATTTTGCAAGTGGTGAAATAAAGCAGGCATCTAGTTTGTTTGACTGTGAACTTGAACTTGAGGAGTACTTGCTCAAGAGCTTCTATAAGACAGCATCCTTAATTGCCGCGAGTACCAAAGGAGCTGCAATTTTTAGTGGGGTTGACAGCAACATTGCCGAGCAAATGTATGAATATGGTAGGAATCTTGGTCTATCCTTCCAAATTGTTGATGACATATTGGATTTCACACAATCTGCAGAGCAGCTGGGAAAACCGGCTGGCAGTGACCTGGCAAAAGGTAACTTGACTGCCCCAGTAATTTTTGCTCTAGAGAAGGAGCCAAAACTGAGAGAAATAGTTGAATCTGAATTCTGTGAGGCCGGTTCCCTCAATGAAGCCATCAAATTGGTGAAGAGTTGTGGTGGCATTGAGAAAGCACAAGACTTGGCAAAACAGAAAGCTGATCTTGCCATCCAGAATCTACAATGCCTTCCTCAGAGTGCCTTTCGGTTAGCACTCGAGAAAATGGTAAAATACAATCTTGAGCGGATTGATTAG 1263 44.02 MSVACRSLDFGPTGFDLVACGCSSNAQFDRFSRRNSAKGVSKSSSRGYAAKKMVYCQRRIGRCRVFSTRAPETLLNGVGQGPPPALDVKKESSSSISLASFFEVVADDLQILNQNLQSIVGAENPVLMSAAEQIFGAGGKRMRPALVFLVSRATAEIAGLKDLTIKHRRLAEIIEMIHTASLIHDDVLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCELELEEYLLKSFYKTASLIAASTKGAAIFSGVDSNIAEQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEKEPKLREIVESEFCEAGSLNEAIKLVKSCGGIEKAQDLAKQKADLAIQNLQCLPQSAFRLALEKMVKYNLERID* 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 48206 58620 - Vvi19g6 Vvi19g6 781505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g6 420 ProSitePatterns Polyprenyl synthases signature 1. 182 196 IPR033749 -
Vvi19g6 420 TIGRFAM prenyl_cyano: solanesyl diphosphate synthase 96 419 - -
Vvi19g6 420 Gene3D Farnesyl Diphosphate Synthase 96 419 IPR008949 -
Vvi19g6 420 SUPERFAMILY Terpenoid synthases 98 418 IPR008949 -
Vvi19g6 420 CDD Trans_IPPS_HT 122 418 IPR000092 GO:0008299
Vvi19g6 420 Pfam Polyprenyl synthetase 126 371 IPR000092 GO:0008299
Vvi19g6 420 PANTHER SOLANESYL DIPHOSPHATE SYNTHASE 2, CHLOROPLASTIC 1 420 - -
Vvi19g6 420 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1 420 - -
Vvi19g6 420 ProSitePatterns Polyprenyl synthases signature 2. 304 316 IPR033749 -
Vvi19g6 420 SFLD Isoprenoid Synthase Type I 131 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g6 K05356 SPS, sds; all-trans-nonaprenyl-diphosphate synthase [EC:2.5.1.84 2.5.1.85] - vvi:100246988 801.971
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g6 . . . . Bpe09g00274 Bpe08g00996 Bma10g00467 . . Cmo04g00701 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1012 . . . . . Blo07g01003 Blo10g00715 . . . Bpe03g00882 Bma07g01157 . . . . . . Car04g00605 Car16g00425 . Cpe01g00589 . . . . . . . Cla07g00994 Cam07g1069 Cec07g1141 Cco07g1119 Clacu07g1042 Cmu07g1034 Cre07g1410 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006158 2 1 2 1 2 1 2 1 1 2 0 1 1 1 2 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 38