Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g607 ATGGCTGCAAGCCAGAATTTCAGAGATCTTCAATGGGTTCTGCAAGTGATCAAATCAGGAAACATCAGCCTCCATAGCATTTCCTTCTACCTTTCTCAGCCAACTTCAGGCTGCTACCAAGAAACAGAGAACTCCATGAATGTAAACATTTCTAAGGACAGCATTTTGTACTTTTCACAACTCCTGACAGTGTTAGCAACTGCCAAGGACTCCCAAGAATCATTGAGAAACTTGGAGTTTCATCATGTTGAATGGGAAGCGCAGCAACTTCGCAATCTTGGAATGGTGCTGGAGAATAACTTGAACATCAAGCAGCTTATGTTTAGGAGAAACAGGCTCAATGTGGAGTGTTTATGGGAGTTATCTGAAATTCTGAAGAGAAATGGAGTCATCAAGGAAATCATGTTCTCTGAATCAGCTATTGGGGCTGCTGGAGCTGGGTTACTTGCTTCTGCACTTAAGGTGAATGATAGCTTGGAAGAGTTGCAGATATGGGAAGACTCAATTGGCTCAAAGGGGGCAGAGGAGCTCTCAAAGATGATTGAAGTAAACTCCACTCTGAAGCTGTTGACAATCTTTGACTCCAACTCAATCACAGCAACTCCCCTAATTTCTGCAGTTTTAGCAAGGAACAGAGCGATGGAAGTTCATATCTGGAGTGGAGAAAAAGGAGAAAAGAGTTCCAAGGTTGTTGAGTTTGTACCCGAGAACAGCACGCTTCGAATTTATAGGCTTGACATTTCAGGTGCTTGCAGAGTTGCTTGTGCTCTGGGGTGGAACTCAACAGTGAAATCACTTGATCTGACTGGAGTCCGGTTAAGATCCCGGTGGGCTAAGGAGTTCCGGTTGGTTTTGGAACAAAACCAGAGCCTCAAAGAAGTGACCCTATCAAAAACTTGCCTAAAGGACAAGGGAGTTGTATATGTTGCAGCTGGGCTTTTCAAGAACCAGAGTTTGGAAAGCTTGTACCTAGATGGAAACTGGTTTACTGGGATAGGAGTAGAGCATTTGCTCTGCCCTTTGAGCCGGTTCTCAGCTCTGCAATATCAAGCAAACGTGACTCTGAAGTCGGTAACTTTTGGAGGCGGAAGAACAAAGATAGGAAGGGATGGGCTTGCAGCCATCTTACAGATGCTAACAACCAACCAAAGCCTGGTGCTGCAGACAATAATGGAAACCTTGCAGGTAAATCCTTGGATTGAGGACATTGATCTCACAAGAACACCACTTCAGAATTCAGGTCAGACAGATGGAATTTACCAAAAGTTAGGCCAGAATGGGAGGACAGAGCCTGAAATTGACCTGCTCAAGGACATGCCACTAACAGTGCCCAAGAGCTGCAGAGTCTTCTTTTGTGGCCAAGAATATGCAGGTAAAACTACACTTTGTAATTCCATTTCACAGAATTTCTCGTCTTCGAAGCTTCCCTATATGGATCAAGTGAGAACTCTAGTGAACCCTGTTGAGCAAGCTGTTAGAACAGCAGGAATGAAAGTAAAAACCTTCAAAGATGAAGACACAAAGATTTCTATATGGAATCTTGCTGGTCAGCATGAGTTCTATTCCCTTCATGACCTCATGTTCCCGGGGCATGGTAGTGCATCATTCTTCTTGATTGTATCCAGTCTGTTCAGGAAACCAACCAACAGAGAATCAAAAACCCCAGCAGAGATAGAGGAGGACCTTCAGTATTGGCTCAGGTTCATAGTCTCCAACTCAAGAAGAGCAGCACAACAATGTATGCTGCCAAATGTAACTGTGGTCCTCACACACTATGACAAAATCAATCAACCATCACAGGACTTCCAAGCTACTGTGAATTCAATTCAGAGATTGAGAGACAAGTTTCAAGGTTTTGTTGACTTCTATCCAACCGTGTTCACGGTCGATGCTAGATCATCTGCCTCAGTGAGTAAACTCACCCATCACCTTCGAAAGACGAGCAAGACCGTGCTCCAAAGAGTCCCCAGGGTTTATGAGCTTTGCAATGATCTGATACAAATTCTCTCAGACTGGAGAACAGAGAACTATAATAAACCAGCCATGAAGTGGAAAGAGTTTGATGAGCTATGCCAGGTTAAGGTTCCATCCTTGAGAATCCGATCAAGACATGACAATAAAGAAAAGGTAGGGATGAGGAGGAGGGCTATTGCTAATTGTCTTCATCACATAGGCGAGGTGATTTACTTCAATGAGCTGGGGTTTCTGATCTTAGATTGTGAGTGGTTCTGCGGTGAAGTACTTGGCCAACTAATACGACTAGATGCTAGAAAGCAAAGCACAACAGAGAATGGATTCATCACCAGGAAAGAATTGGAGAAGATTCTTAGAGGAAGTCTACAAAGTCAGATTCCTGGAATGGGATCAAAGGTTTTTGAGAACTTGGAGGCCAGTGACCTTGTAAGGATGATGCTGAAACTGGAACTTTGTTATGAACAAGATCCATCAGACCCCAATTCACTGCTACTGATCCCCTCAATCCTAGAAGAAGGCAGGGGAAGGCCACAGAGATGGCAGTTGATTGCACCCGATTGCGTTTATTCAGGGAGACATCTTGAGTGTGATGATTCAAGCCACATGTTCCTCACGCCAGGCTTCTTTCCCCGTTGTACACAAGCTCAGGTGCATCTCCACAACAGAGTCATGGGGTTGAAGCACCAACATGGAGCAACCTACAGTCTTGAGAAGTACCTCATCTTGATAAATATTAATGGTATCTATGTCAGAATCGAACTTGGAGGGCAAGCCGGGTTTGATTTTGCTCGAGACCTCCTATCAGATGATGATTTTCGGGAAGTGCTTCACCGGAGACTCCTAATTGAGCTCCACCGCAAAGTGAACTACCTGGTGAACTACAACGTCCAACTCGAGGAAAGGAAAGTGCCTAACATGTTCTACTTTGTTAGAACAGAAAACTACTCAAGGAGATTGGTCACCAACATGATTTCTGGAATGACTGCACTTAGGCTGCACATGTTATGCGAATTCAGGCGGGAAATGCATGTCGTTGAAGATCAGATGGGGTGTGAAATGATGCACATTGACAACATGACTGTGAAGAGCCTGGCTCCATACATGAAGAAGTTCATGAAACTGCTGACATTTGCTCTCAAGATTGGAGCCCATTTAGCAGCTGGTATGGGAGAGATGATCCCAGATTTGAGCAGAGAAGTTGCTCATCTTGTTGAACCTTCACTCATCAGCAGCAGAAACAGGGCCAGGTCCTTGGGTGGAGAAAGTACAAGGGACTTTCACCAAGATCTAAGAGCAGCACAGCAATGGGTTGTGGACTTCTTAAGGGACAGGAGGTGCTCAACTGGAAGAGAAATTGCAGAGAAGTTCGGACTATGGAGAGTGAGATACAGAGATAACGGACAAATTGCATGGATATGTCGAAGGCATATGAACACAAGATCACATGAAATAATTGAGGTTCCCATTTGA 3444 44.4 MAASQNFRDLQWVLQVIKSGNISLHSISFYLSQPTSGCYQETENSMNVNISKDSILYFSQLLTVLATAKDSQESLRNLEFHHVEWEAQQLRNLGMVLENNLNIKQLMFRRNRLNVECLWELSEILKRNGVIKEIMFSESAIGAAGAGLLASALKVNDSLEELQIWEDSIGSKGAEELSKMIEVNSTLKLLTIFDSNSITATPLISAVLARNRAMEVHIWSGEKGEKSSKVVEFVPENSTLRIYRLDISGACRVACALGWNSTVKSLDLTGVRLRSRWAKEFRLVLEQNQSLKEVTLSKTCLKDKGVVYVAAGLFKNQSLESLYLDGNWFTGIGVEHLLCPLSRFSALQYQANVTLKSVTFGGGRTKIGRDGLAAILQMLTTNQSLVLQTIMETLQVNPWIEDIDLTRTPLQNSGQTDGIYQKLGQNGRTEPEIDLLKDMPLTVPKSCRVFFCGQEYAGKTTLCNSISQNFSSSKLPYMDQVRTLVNPVEQAVRTAGMKVKTFKDEDTKISIWNLAGQHEFYSLHDLMFPGHGSASFFLIVSSLFRKPTNRESKTPAEIEEDLQYWLRFIVSNSRRAAQQCMLPNVTVVLTHYDKINQPSQDFQATVNSIQRLRDKFQGFVDFYPTVFTVDARSSASVSKLTHHLRKTSKTVLQRVPRVYELCNDLIQILSDWRTENYNKPAMKWKEFDELCQVKVPSLRIRSRHDNKEKVGMRRRAIANCLHHIGEVIYFNELGFLILDCEWFCGEVLGQLIRLDARKQSTTENGFITRKELEKILRGSLQSQIPGMGSKVFENLEASDLVRMMLKLELCYEQDPSDPNSLLLIPSILEEGRGRPQRWQLIAPDCVYSGRHLECDDSSHMFLTPGFFPRCTQAQVHLHNRVMGLKHQHGATYSLEKYLILININGIYVRIELGGQAGFDFARDLLSDDDFREVLHRRLLIELHRKVNYLVNYNVQLEERKVPNMFYFVRTENYSRRLVTNMISGMTALRLHMLCEFRREMHVVEDQMGCEMMHIDNMTVKSLAPYMKKFMKLLTFALKIGAHLAAGMGEMIPDLSREVAHLVEPSLISSRNRARSLGGESTRDFHQDLRAAQQWVVDFLRDRRCSTGREIAEKFGLWRVRYRDNGQIAWICRRHMNTRSHEIIEVPI* 1148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7709733 7714248 - Vvi19g607 Vvi19g607 782106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g607 1147 Pfam Leucine Rich repeat 315 337 IPR001611 GO:0005515
Vvi19g607 1147 Pfam Ras of Complex, Roc, domain of DAPkinase 448 574 - -
Vvi19g607 1147 Gene3D - 446 650 IPR027417 -
Vvi19g607 1147 SUPERFAMILY RNI-like 64 215 - -
Vvi19g607 1147 Pfam C-terminal of Roc, COR, domain 675 846 IPR032171 -
Vvi19g607 1147 SUPERFAMILY RNI-like 244 414 - -
Vvi19g607 1147 SMART LRR_RI_2 156 183 - -
Vvi19g607 1147 SMART LRR_RI_2 316 343 - -
Vvi19g607 1147 SMART LRR_RI_2 128 155 - -
Vvi19g607 1147 SMART LRR_RI_2 288 315 - -
Vvi19g607 1147 Gene3D Ribonuclease Inhibitor 224 435 IPR032675 -
Vvi19g607 1147 Gene3D Ribonuclease Inhibitor 51 217 IPR032675 -
Vvi19g607 1147 PANTHER PROTEIN TORNADO 1 1 386 - -
Vvi19g607 1147 PANTHER PROTEIN TORNADO 1 386 916 - -
Vvi19g607 1147 PANTHER PROTEIN TORNADO 1 937 1140 - -
Vvi19g607 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 637 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g607 - - - vvi:100246876 1783.07
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g607 . . Bda07g00394 . . . . . . . . . Car01g00970 Car09g00896 Sed07g2724 Cpe06g00796 Cpe02g00804 Bhi09g01727 Tan01g3153 Cmetu01g0554 . Hepe01g1229 Mch11g1238 . . . . . . . . Cone6ag0031 Cone9ag0031 . . Lsi02g01858 Csa07g00975 . . . . . . Bpe11g00572 . . Bma14g00307 . Cmo01g01142 Cmo09g00987 . . . . . . . . . . . . . Cla09g02047 Cam09g2135 Cec09g2201 . . . . . . Chy01g01082 Cme01g00963
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006977 1 1 2 1 1 1 2 1 1 2 1 1 0 1 1 2 1 3 2 1 1 1 1 1 1 2 1 1 1 1 37