Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g610 ATGCCAGCGGTGAGCCCCGATCAATCTGATCGGGATTCAGAGCCGTTTGTGGAGGTAGATCCGACTAGAAGATATGGTCGGTACAATGAACTGCTTGGCTGTGGTGCAGTGAAGAGGGTGTACCGTGCTTTTGATCAGGAGGAGGGCATAGAGGTGGCTTGGAACCAGGTGAAATTAAGGGCTTTTAGTGATGACAAGCCAATGATTGATCGGCTTTTCTCTGAAGTTCGATTGCTCAAGACTCTTAAGGACAAGAACATCATTGCTCTGTACAATGTGTGGCGAAATGAGGATCATAACACCTTGAATTTCATAACTGAAGTGTGTACATCTGGTAATTTGAGGGAGTATCGGAAGAAGCATAGACATGTTTCCATGAAGGCACTGAAGAAATGGTCAAAGCAGATTTTGAAGGGTTTAGACTATTTGCATAGGCATGAACCCTGTATTATTCATAGGGATCTCAACTGCAGTAATGTCTTCATCAATGGCAATGTGGGTAAGGTGAAGATCGGTGATTTTGGATTGGCAGCAACAGTGGGGAAGAGCCATGTAGCACATTCAGTGCTTGGAACACCAGAATTCATGGCTCCAGAGCTATATGAAGAGGACTACACAGAACTAGTAGACATATACTCATTTGGTATGTGCTTTCTAGAGATGGTCACATTAGAAATCCCATACAGCGAATGTGACAACATCGCCAAAATATACAAAAAGGTGATATCTGGGGCTAGACCTCGGGCCATGGACAAGGTCAGGGACCCTGAGGTGAAGGCATTCATCGAAAAGTGCCTGGCAAAGCCAAGGGCAAGACCCTCAGCTTCAGAGCTCCTCAATGACCCATTTTTCCATGGAATTGATGATGACGAAATTGACAACAGTGATAGTTAG 894 44.85 MPAVSPDQSDRDSEPFVEVDPTRRYGRYNELLGCGAVKRVYRAFDQEEGIEVAWNQVKLRAFSDDKPMIDRLFSEVRLLKTLKDKNIIALYNVWRNEDHNTLNFITEVCTSGNLREYRKKHRHVSMKALKKWSKQILKGLDYLHRHEPCIIHRDLNCSNVFINGNVGKVKIGDFGLAATVGKSHVAHSVLGTPEFMAPELYEEDYTELVDIYSFGMCFLEMVTLEIPYSECDNIAKIYKKVISGARPRAMDKVRDPEVKAFIEKCLAKPRARPSASELLNDPFFHGIDDDEIDNSDS* 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7730104 7732118 - Vvi19g610 Vvi19g610 782109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g610 297 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g610 297 CDD STKc_WNK 24 284 - -
Vvi19g610 297 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g610 297 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 1 296 - -
Vvi19g610 297 Gene3D Transferase(Phosphotransferase) domain 1 109 289 - -
Vvi19g610 297 SUPERFAMILY Protein kinase-like (PK-like) 15 291 IPR011009 -
Vvi19g610 297 MobiDBLite consensus disorder prediction 271 297 - -
Vvi19g610 297 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Vvi19g610 297 PIRSF TyrPK_CSF1-R 118 281 - -
Vvi19g610 297 PIRSF TyrPK_CSF1-R 23 131 - -
Vvi19g610 297 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 296 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g672 Vvi19g610 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76469 PF00069 Pkinase 4.80E-54 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g610 K08867 - vvi:100257136 589.341