Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi19g612 | ATGTCCCCCGCCAAGCTCCCGATCTCTCGCTCCCCTTGCCTCACCATCCCTTCCGGTCTCAGCCCCTCCTCCTTTCTCGACTCCCCCGTTCTACTCTCCAACATGAAGGTTGAGCCTTCCCCAACTACTGGTTCCTTTGCCAAGCCTCAAATGATTCACGGATCTGTTGGCTCCAGTATGTTCTCGTCAACTTCTAATTGCTCCAATAGTAATACATTTGATGAAAGAAAATCTGGCTCCTTTGAGTTTAAACCCCACACTGTATCAAATTCTGCTTCAGGGTTATTCTTGGTGGGATCACCGGTTTCTGCAGATCTTAACCACCAGCAAGTTAAGCCCTTCATACCAGTTCAGGCCCAGCATCCAGATCTGTCATTAATGCCATCACCTACAGTTAAAAGTGAGATGATGGCACCCTCAAATGAATTGAGTCTATGTTCACCTGGGCATATGGTGACATCATTGGAAAGTGCACCTGCTGAAGTTGATTCTGATGAGCTAAACCAGCAAGGGCATCCCAATAATGGGGTCCAAGCATCACAATCTGATCAGAAAGGAATTGGGCCTTCGGCTGTAGTTGAGAGATCATCTGAGGATGGATATAATTGGAGAAAATATGGACAGAAACATGTTAAAGGAAGTGAATTTCCACGTAGCTATTACAAATGTACACATCCTAACTGTGAGGTAAAAAAGCTATTTGAACGTGCTCATGATGGACAGATAGTAGAGATCATCTATAAGGGTACGCATGATCATCCTAAACCTCAACCTAGTCGCCGATATGCTTCTGGTGCTATTTTACCTGTCCAAGAAGAAAGACCTGATAAAGTTTCATCTTTAATTGGTCGAGATGACAAGTCACCCAGCATATATGGCCAGATGGCCCACAACATCGACCCCAATGGCACTCCCGAACTATCGCCTGTTGCAGCAAATGATGATGTTGTAGAAGGTGCTATCCTTGATGAGGTTGATGAAGATGATCCATTGTCAAAGCGGAGGAAGATGGAAATTGGTGGGATTGATGTCACTCCTGTGGTTAAGCCTATCAGAGAACCGCGTGTTGTTGTTCAAACTCTGAGTGAGGTTGACATACTGGATGATGGGTATCGGTGGCGCAAATATGGGCAGAAAGTGGTGAGAGGCAACCCTAATCCGAGGAGTTATTACAAGTGCACGAATGCTGGATGCCCTGTTAGGAAGCATGTGGAGAGAGCATCCCATGATCCAAAAGCAGTGATAACCACATATGAAGGAAAACATAATCATGATGTACCAACTGCAAGGACTAATAGCCATGACGCAGCAGGACAAGTAGCTCTGAATGGAATGCCAATGATTAGATCAGAAGAAAATGACACAATCAGTCTTGATCTTGGGGTTGGGATAAACTCTGCTTCTGAGAATAGACCAAATGTACAGCATCAAACACTGCATGCTGAACTTGTTCTAACCCAAACCCGCACTAACAATTCCAATTTTCAGGCAGTTCAAGCAACCCCAGTTTCAAGATACTATGGTGTTCTAAACAATGGCATGGATCTGTATGGATTTAGAGAAAACCTGGGTGAAAGCCGGAGTTTTGAAACTCCACCTTTAAACCATTCCTCCAATCCATGTCCACAAAACATGGGGAGAATACTAATGGGCCCATGA | 1659 | 44.73 | MSPAKLPISRSPCLTIPSGLSPSSFLDSPVLLSNMKVEPSPTTGSFAKPQMIHGSVGSSMFSSTSNCSNSNTFDERKSGSFEFKPHTVSNSASGLFLVGSPVSADLNHQQVKPFIPVQAQHPDLSLMPSPTVKSEMMAPSNELSLCSPGHMVTSLESAPAEVDSDELNQQGHPNNGVQASQSDQKGIGPSAVVERSSEDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERAHDGQIVEIIYKGTHDHPKPQPSRRYASGAILPVQEERPDKVSSLIGRDDKSPSIYGQMAHNIDPNGTPELSPVAANDDVVEGAILDEVDEDDPLSKRRKMEIGGIDVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTNSHDAAGQVALNGMPMIRSEENDTISLDLGVGINSASENRPNVQHQTLHAELVLTQTRTNNSNFQAVQATPVSRYYGVLNNGMDLYGFRENLGESRSFETPPLNHSSNPCPQNMGRILMGP* | 553 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 7760185 | 7767468 | + | Vvi19g612 | Vvi19g612 | 782111 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi19g612 | 552 | ProSiteProfiles | WRKY domain profile. | 362 | 427 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi19g612 | 552 | ProSiteProfiles | WRKY domain profile. | 198 | 256 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi19g612 | 552 | SUPERFAMILY | WRKY DNA-binding domain | 359 | 427 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi19g612 | 552 | MobiDBLite | consensus disorder prediction | 163 | 187 | - | - | |
Vvi19g612 | 552 | MobiDBLite | consensus disorder prediction | 156 | 188 | - | - | |
Vvi19g612 | 552 | SMART | WRKY_cls | 197 | 255 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi19g612 | 552 | SMART | WRKY_cls | 367 | 426 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi19g612 | 552 | Gene3D | WRKY domain | 189 | 257 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi19g612 | 552 | Gene3D | WRKY domain | 352 | 428 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi19g612 | 552 | PANTHER | WRKY TRANSCRIPTION FACTOR 20 ISOFORM X1-RELATED | 1 | 523 | - | - | |
Vvi19g612 | 552 | Pfam | WRKY DNA -binding domain | 198 | 254 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi19g612 | 552 | Pfam | WRKY DNA -binding domain | 368 | 424 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi19g612 | 552 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 1 | 523 | IPR044810 | GO:0003700 | |
Vvi19g612 | 552 | SUPERFAMILY | WRKY DNA-binding domain | 196 | 256 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14430 | PF03106 | WRKY | 1.30E-25 | CL0274 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi19g612 | - | - | vvi:100245137 | 1107.43 |