Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g612 ATGTCCCCCGCCAAGCTCCCGATCTCTCGCTCCCCTTGCCTCACCATCCCTTCCGGTCTCAGCCCCTCCTCCTTTCTCGACTCCCCCGTTCTACTCTCCAACATGAAGGTTGAGCCTTCCCCAACTACTGGTTCCTTTGCCAAGCCTCAAATGATTCACGGATCTGTTGGCTCCAGTATGTTCTCGTCAACTTCTAATTGCTCCAATAGTAATACATTTGATGAAAGAAAATCTGGCTCCTTTGAGTTTAAACCCCACACTGTATCAAATTCTGCTTCAGGGTTATTCTTGGTGGGATCACCGGTTTCTGCAGATCTTAACCACCAGCAAGTTAAGCCCTTCATACCAGTTCAGGCCCAGCATCCAGATCTGTCATTAATGCCATCACCTACAGTTAAAAGTGAGATGATGGCACCCTCAAATGAATTGAGTCTATGTTCACCTGGGCATATGGTGACATCATTGGAAAGTGCACCTGCTGAAGTTGATTCTGATGAGCTAAACCAGCAAGGGCATCCCAATAATGGGGTCCAAGCATCACAATCTGATCAGAAAGGAATTGGGCCTTCGGCTGTAGTTGAGAGATCATCTGAGGATGGATATAATTGGAGAAAATATGGACAGAAACATGTTAAAGGAAGTGAATTTCCACGTAGCTATTACAAATGTACACATCCTAACTGTGAGGTAAAAAAGCTATTTGAACGTGCTCATGATGGACAGATAGTAGAGATCATCTATAAGGGTACGCATGATCATCCTAAACCTCAACCTAGTCGCCGATATGCTTCTGGTGCTATTTTACCTGTCCAAGAAGAAAGACCTGATAAAGTTTCATCTTTAATTGGTCGAGATGACAAGTCACCCAGCATATATGGCCAGATGGCCCACAACATCGACCCCAATGGCACTCCCGAACTATCGCCTGTTGCAGCAAATGATGATGTTGTAGAAGGTGCTATCCTTGATGAGGTTGATGAAGATGATCCATTGTCAAAGCGGAGGAAGATGGAAATTGGTGGGATTGATGTCACTCCTGTGGTTAAGCCTATCAGAGAACCGCGTGTTGTTGTTCAAACTCTGAGTGAGGTTGACATACTGGATGATGGGTATCGGTGGCGCAAATATGGGCAGAAAGTGGTGAGAGGCAACCCTAATCCGAGGAGTTATTACAAGTGCACGAATGCTGGATGCCCTGTTAGGAAGCATGTGGAGAGAGCATCCCATGATCCAAAAGCAGTGATAACCACATATGAAGGAAAACATAATCATGATGTACCAACTGCAAGGACTAATAGCCATGACGCAGCAGGACAAGTAGCTCTGAATGGAATGCCAATGATTAGATCAGAAGAAAATGACACAATCAGTCTTGATCTTGGGGTTGGGATAAACTCTGCTTCTGAGAATAGACCAAATGTACAGCATCAAACACTGCATGCTGAACTTGTTCTAACCCAAACCCGCACTAACAATTCCAATTTTCAGGCAGTTCAAGCAACCCCAGTTTCAAGATACTATGGTGTTCTAAACAATGGCATGGATCTGTATGGATTTAGAGAAAACCTGGGTGAAAGCCGGAGTTTTGAAACTCCACCTTTAAACCATTCCTCCAATCCATGTCCACAAAACATGGGGAGAATACTAATGGGCCCATGA 1659 44.73 MSPAKLPISRSPCLTIPSGLSPSSFLDSPVLLSNMKVEPSPTTGSFAKPQMIHGSVGSSMFSSTSNCSNSNTFDERKSGSFEFKPHTVSNSASGLFLVGSPVSADLNHQQVKPFIPVQAQHPDLSLMPSPTVKSEMMAPSNELSLCSPGHMVTSLESAPAEVDSDELNQQGHPNNGVQASQSDQKGIGPSAVVERSSEDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERAHDGQIVEIIYKGTHDHPKPQPSRRYASGAILPVQEERPDKVSSLIGRDDKSPSIYGQMAHNIDPNGTPELSPVAANDDVVEGAILDEVDEDDPLSKRRKMEIGGIDVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTNSHDAAGQVALNGMPMIRSEENDTISLDLGVGINSASENRPNVQHQTLHAELVLTQTRTNNSNFQAVQATPVSRYYGVLNNGMDLYGFRENLGESRSFETPPLNHSSNPCPQNMGRILMGP* 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7760185 7767468 + Vvi19g612 Vvi19g612 782111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g612 552 ProSiteProfiles WRKY domain profile. 362 427 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g612 552 ProSiteProfiles WRKY domain profile. 198 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g612 552 SUPERFAMILY WRKY DNA-binding domain 359 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g612 552 MobiDBLite consensus disorder prediction 163 187 - -
Vvi19g612 552 MobiDBLite consensus disorder prediction 156 188 - -
Vvi19g612 552 SMART WRKY_cls 197 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g612 552 SMART WRKY_cls 367 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g612 552 Gene3D WRKY domain 189 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g612 552 Gene3D WRKY domain 352 428 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g612 552 PANTHER WRKY TRANSCRIPTION FACTOR 20 ISOFORM X1-RELATED 1 523 - -
Vvi19g612 552 Pfam WRKY DNA -binding domain 198 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g612 552 Pfam WRKY DNA -binding domain 368 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g612 552 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 523 IPR044810 GO:0003700
Vvi19g612 552 SUPERFAMILY WRKY DNA-binding domain 196 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g673 Vvi19g612 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14430 PF03106 WRKY 1.30E-25 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g612 - - vvi:100245137 1107.43